Orthogroup:group_304


Homologs in group_304

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08065 FBDBKF_08065 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_13895 EHELCC_13895 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_14340 NLDBIP_14340 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_08510 LHKJJB_08510 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_08060 HKOGLL_08060 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS12515 F4V73_RS12515 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS12930 F4V73_RS12930 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
PMI_RS14650 PMI_RS14650 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of group_304 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_304 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_304

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_304.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 araC 5
2 - 3

Product

# Product Occurence
1 AraC-type DNA-binding domain and AraC-containing proteins 5
2 helix-turn-helix transcriptional regulator 3

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2207 8 K Transcription (K) AraC-type DNA-binding domain and AraC-containing proteins

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K25495 1 AraC family transcriptional regulator, regulator of nimT - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02311 3 AraC-like ligand binding domain
PF12833 8 Helix-turn-helix domain

Annotations of the 77 SwissProt hits

Annotation Number of occurrences
Arabinose operon regulatory protein 3
HTH-type transcriptional activator RhaR 38
HTH-type transcriptional activator RhaS 24
HTH-type transcriptional regulator GadX 2
HTH-type transcriptional regulator NimR 1
HTH-type transcriptional regulator RipA 3
Regulatory protein SoxS 4
Uncharacterized HTH-type transcriptional regulator HI_1052 1
Uncharacterized HTH-type transcriptional regulator in cgkA 5'region (Fragment) 1

Protein length

Min length 256
Max length 261
Mean length (sd) 260.0 (1.9)
Median length 261.0

Protein length distribution