Orthogroup:group_3029


Homologs in group_3029

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_18060 FBDBKF_18060 Morganella morganii S1 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains
EHELCC_16760 EHELCC_16760 Morganella morganii S2 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains
NLDBIP_17690 NLDBIP_17690 Morganella morganii S4 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains
LHKJJB_17610 LHKJJB_17610 Morganella morganii S3 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains
HKOGLL_17425 HKOGLL_17425 Morganella morganii S5 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains
F4V73_RS10210 F4V73_RS10210 Morganella psychrotolerans - YafY family protein

Distribution of group_3029 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3029 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3029

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_3029.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 yobV 5
2 - 1

Product

# Product Occurence
1 putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains 5
2 YafY family protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2378 6 K Transcription (K) Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains

Pfam domain Annotation(s)

Domain ID Occurences Description
PF08279 6 HTH domain
PF13280 6 WYL domain

Annotations of the 2 SwissProt hits

Annotation Number of occurrences
Stress-involved WYL domain-containing regulator 1
Uncharacterized HTH-type transcriptional regulator YobV 1

Protein length

Min length 231
Max length 232
Mean length (sd) 231.8 (0.4)
Median length 232.0

Protein length distribution