Orthogroup:group_3002



Homologs in group_3002

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_17595 FBDBKF_17595 Morganella morganii S1 soxR DNA-binding transcriptional regulator, MerR family
EHELCC_18080 EHELCC_18080 Morganella morganii S2 soxR DNA-binding transcriptional regulator, MerR family
NLDBIP_18070 NLDBIP_18070 Morganella morganii S4 soxR DNA-binding transcriptional regulator, MerR family
LHKJJB_18265 LHKJJB_18265 Morganella morganii S3 soxR DNA-binding transcriptional regulator, MerR family
HKOGLL_17935 HKOGLL_17935 Morganella morganii S5 soxR DNA-binding transcriptional regulator, MerR family
F4V73_RS14975 F4V73_RS14975 Morganella psychrotolerans - helix-turn-helix domain-containing protein

Distribution of group_3002 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3002 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3002

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_3002.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 soxR 5
2 - 1

Product

# Product Occurence
1 DNA-binding transcriptional regulator, MerR family 5
2 helix-turn-helix domain-containing protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0789 6 K Transcription (K) DNA-binding transcriptional regulator, MerR family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K19575 6 MerR family transcriptional regulator, activator of bmr gene - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF13411 6 MerR HTH family regulatory protein

Annotations of the 19 SwissProt hits

Annotation Number of occurrences
HTH-type transcriptional regulator CueR 6
HTH-type transcriptional regulator SkgA 2
HTH-type transcriptional regulator ZntR homolog 1
Heavy metal-dependent transcription regulator 2 1
Mercuric resistance operon regulatory protein 2
Mercuric resistance operon regulatory protein (Fragment) 1
Multidrug-efflux transporter 1 regulator 1
Multidrug-efflux transporter 2 regulator 1
Probable heavy metal-dependent transcriptional regulator HI_0293 1
Uncharacterized HTH-type transcriptional regulator HI_0186 1
Uncharacterized HTH-type transcriptional regulator PA4778 1
Uncharacterized HTH-type transcriptional regulator YdfL 1

Protein length

Unique protein length 267

Protein length distribution