Orthogroup:group_3001


Homologs in group_3001

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_17590 FBDBKF_17590 Morganella morganii S1 cDA1 Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family
EHELCC_18075 EHELCC_18075 Morganella morganii S2 cDA1 Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family
NLDBIP_18075 NLDBIP_18075 Morganella morganii S4 cDA1 Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family
LHKJJB_18270 LHKJJB_18270 Morganella morganii S3 cDA1 Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family
HKOGLL_17930 HKOGLL_17930 Morganella morganii S5 cDA1 Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family
F4V73_RS14970 F4V73_RS14970 Morganella psychrotolerans - polysaccharide deacetylase family protein

Distribution of group_3001 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3001 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3001

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_3001.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 cDA1 5
2 - 1

Product

# Product Occurence
1 Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family 5
2 polysaccharide deacetylase family protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0726 6 GM Carbohydrate transport and metabolism (G)
Cell wall/membrane/envelope biogenesis (M)		 Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01522 6 Polysaccharide deacetylase

Annotations of the 13 SwissProt hits

Annotation Number of occurrences
Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase 11
Putative polysaccharide deacetylase YxkH 1
Uncharacterized protein YadE 1

Protein length

Min length 437
Max length 441
Mean length (sd) 437.7 (1.6)
Median length 437.0

Protein length distribution