Orthogroup:group_2995


Homologs in group_2995

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_17330 FBDBKF_17330 Morganella morganii S1 dinP Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair
EHELCC_01560 EHELCC_01560 Morganella morganii S2 dinP Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair
NLDBIP_01900 NLDBIP_01900 Morganella morganii S4 dinP Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair
LHKJJB_00135 LHKJJB_00135 Morganella morganii S3 dinP Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair
HKOGLL_00175 HKOGLL_00175 Morganella morganii S5 dinP Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair
PMI_RS12285 PMI_RS12285 Proteus mirabilis HI4320 umuC translesion error-prone DNA polymerase V subunit UmuC

Distribution of group_2995 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2995 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2995

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_2995.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 dinP 5
2 umuC 1

Product

# Product Occurence
1 Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair 5
2 translesion error-prone DNA polymerase V subunit UmuC 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0389 6 L Replication, recombination and repair (L) Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03502 6 DNA polymerase V - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00817 6 impB/mucB/samB family
PF11798 6 IMS family HHH motif
PF11799 6 impB/mucB/samB family C-terminal domain
PF13438 6 Domain of unknown function (DUF4113)

Annotations of the 255 SwissProt hits

Annotation Number of occurrences
DNA polymerase IV 208
DNA polymerase IV (Fragment) 1
DNA polymerase IV 1 9
DNA polymerase IV 2 9
DNA polymerase IV 3 1
DNA polymerase eta 3
DNA polymerase iota 3
DNA polymerase kappa 4
DNA repair protein REV1 5
DNA repair protein Rev1 1
DNA repair protein homolog YobH 1
DNA repair protein rev1 1
Protein ImpB 1
Protein MucB 2
Protein SamB 1
Protein UmuC 2
Putative UV-damage repair protein UvrX 1
Uncharacterized protein MG360 1
Uncharacterized protein MG360 homolog 1

Protein length

Min length 420
Max length 422
Mean length (sd) 420.3 (0.8)
Median length 420.0

Protein length distribution