Orthogroup:group_2987


Homologs in group_2987

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_17095 FBDBKF_17095 Morganella morganii S1 - Integrase
EHELCC_01795 EHELCC_01795 Morganella morganii S2 - Integrase
NLDBIP_01665 NLDBIP_01665 Morganella morganii S4 - Integrase
LHKJJB_00370 LHKJJB_00370 Morganella morganii S3 - Integrase
HKOGLL_00410 HKOGLL_00410 Morganella morganii S5 - Integrase
F4V73_RS18035 F4V73_RS18035 Morganella psychrotolerans - site-specific integrase

Distribution of group_2987 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2987 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2987

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_2987.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 6

Product

# Product Occurence
1 Integrase 5
2 site-specific integrase 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0582 6 LX Replication, recombination and repair (L)
Mobilome: prophages, transposons (X)		 Integrase/recombinase, includes phage integrase

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00589 6 Phage integrase family
PF13356 5 Arm DNA-binding domain
PF22022 5 Phage integrase central domain

Annotations of the 9 SwissProt hits

Annotation Number of occurrences
Integrase 5
Prophage integrase IntA 1
Prophage integrase IntS 1
Prophage integrase IntZ 1
Putative protein IntB 1

Protein length

Min length 369
Max length 400
Mean length (sd) 394.8 (12.7)
Median length 400.0

Protein length distribution