Orthogroup:group_279


Homologs in group_279

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05935 FBDBKF_05935 Morganella morganii S1 dnaE DNA polymerase III subunit alpha
EHELCC_08980 EHELCC_08980 Morganella morganii S2 dnaE DNA polymerase III subunit alpha
NLDBIP_09360 NLDBIP_09360 Morganella morganii S4 dnaE DNA polymerase III subunit alpha
LHKJJB_08395 LHKJJB_08395 Morganella morganii S3 dnaE DNA polymerase III subunit alpha
HKOGLL_07945 HKOGLL_07945 Morganella morganii S5 dnaE DNA polymerase III subunit alpha
F4V73_RS15960 F4V73_RS15960 Morganella psychrotolerans dnaE DNA polymerase III subunit alpha
F4V73_RS18015 F4V73_RS18015 Morganella psychrotolerans dnaE DNA polymerase III subunit alpha
PMI_RS11210 PMI_RS11210 Proteus mirabilis HI4320 dnaE DNA polymerase III subunit alpha

Distribution of group_279 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_279 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_279

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_279.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 dnaE 8

Product

# Product Occurence
1 DNA polymerase III subunit alpha 8

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0587 8 L Replication, recombination and repair (L) DNA polymerase III, alpha subunit

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02337 7 DNA polymerase III subunit alpha [EC:2.7.7.7] DNA replication
Mismatch repair
Homologous recombination		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01336 7 OB-fold nucleic acid binding domain
PF02811 8 PHP domain
PF07733 8 Bacterial DNA polymerase III alpha NTPase domain
PF14579 8 Helix-hairpin-helix motif
PF17657 8 Bacterial DNA polymerase III alpha subunit finger domain
PF20914 7 DNA polymerase III subunit alpha, C-terminal domain

Annotations of the 202 SwissProt hits

Annotation Number of occurrences
DNA polymerase III PolC-type 61
DNA polymerase III polC-type 2
DNA polymerase III subunit alpha 63
DNA polymerase III subunit alpha (Fragments) 1
DNA-directed DNA polymerase 1
Error-prone DNA polymerase 68
Error-prone DNA polymerase 1 2
Error-prone DNA polymerase 2 2
Error-prone DNA polymerase 3 1
Probable DNA polymerase YorL 1

Protein length

Min length 1159
Max length 1177
Mean length (sd) 1161.4 (6.3)
Median length 1159.0

Protein length distribution