Orthogroup:group_2521



Homologs in group_2521

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_02195 FBDBKF_02195 Morganella morganii S1 lsrR transcriptional regulator LsrR
EHELCC_02665 EHELCC_02665 Morganella morganii S2 lsrR transcriptional regulator LsrR
NLDBIP_00795 NLDBIP_00795 Morganella morganii S4 lsrR transcriptional regulator LsrR
LHKJJB_01240 LHKJJB_01240 Morganella morganii S3 lsrR transcriptional regulator LsrR
HKOGLL_01280 HKOGLL_01280 Morganella morganii S5 lsrR transcriptional regulator LsrR
F4V73_RS04565 F4V73_RS04565 Morganella psychrotolerans lsrR transcriptional regulator LsrR

Distribution of group_2521 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2521 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2521

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_2521.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 lsrR 6

Product

# Product Occurence
1 transcriptional regulator LsrR 6

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2390 6 K Transcription (K) DNA-binding transcriptional regulator LsrR, DeoR family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11531 6 lsr operon transcriptional repressor Quorum sensing
Biofilm formation - Escherichia coli
-

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00325 6 Bacterial regulatory proteins, crp family
PF04198 6 Putative sugar-binding domain

Annotations of the 21 SwissProt hits

Annotation Number of occurrences
Central glycolytic genes regulator 2
Deoxyribonucleoside regulator 1
Erythritol catabolism regulatory protein EryD 1
Sorbitol operon regulator 1
Transcriptional regulator LsrR 15
Uncharacterized transcriptional regulator YjhU 1

Protein length

Min length 307
Max length 316
Mean length (sd) 308.5 (3.7)
Median length 307.0

Protein length distribution