Orthogroup:group_246


Homologs in group_246

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_02995 FBDBKF_02995 Morganella morganii S1 gadA Glutamate or tyrosine decarboxylase or a related PLP-dependent protein
EHELCC_07540 EHELCC_07540 Morganella morganii S2 gadA Glutamate or tyrosine decarboxylase or a related PLP-dependent protein
NLDBIP_07865 NLDBIP_07865 Morganella morganii S4 gadA Glutamate or tyrosine decarboxylase or a related PLP-dependent protein
LHKJJB_07400 LHKJJB_07400 Morganella morganii S3 gadA Glutamate or tyrosine decarboxylase or a related PLP-dependent protein
HKOGLL_03530 HKOGLL_03530 Morganella morganii S5 gadA Glutamate or tyrosine decarboxylase or a related PLP-dependent protein
F4V73_RS11910 F4V73_RS11910 Morganella psychrotolerans - pyridoxal-dependent decarboxylase
PMI_RS05835 PMI_RS05835 Proteus mirabilis HI4320 disA swarming inhibition tyrosine decarboxylase DisA
PMI_RS11930 PMI_RS11930 Proteus mirabilis HI4320 - pyridoxal-dependent decarboxylase

Distribution of group_246 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_246 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_246

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_246.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 gadA 5
2 - 2
3 disA 1

Product

# Product Occurence
1 Glutamate or tyrosine decarboxylase or a related PLP-dependent protein 5
2 pyridoxal-dependent decarboxylase 2
3 swarming inhibition tyrosine decarboxylase DisA 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0076 8 E Amino acid transport and metabolism (E) Glutamate or tyrosine decarboxylase or a related PLP-dependent protein

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00282 7 Pyridoxal-dependent decarboxylase conserved domain
PF21391 1 Tyrosine decarboxylase, C-terminal

Annotations of the 89 SwissProt hits

Annotation Number of occurrences
Acidic amino acid decarboxylase GADL1 3
Acidic amino acid decarboxylase GADL1 (Fragment) 1
Aromatic-L-amino-acid decarboxylase 1
Aspartate 1-decarboxylase 1
Cysteine sulfinic acid decarboxylase 3
Glutamate decarboxylase 4
Glutamate decarboxylase 1 9
Glutamate decarboxylase 2 5
Glutamate decarboxylase 3 1
Glutamate decarboxylase 4 1
Glutamate decarboxylase 5 1
Glutamate decarboxylase-like protein FG08083 1
Histidine decarboxylase 7
L-2,4-diaminobutyrate decarboxylase 3
L-aspartate decarboxylase 1
L-aspartate decarboxylase dtxS4 1
L-aspartate/L-glutamate decarboxylase 1
L-tryptophan decarboxylase cnsB 1
L-tyrosine decarboxylase 4
L-tyrosine/L-aspartate decarboxylase 1
Probable L-aspartate decarboxylase 7
Probable L-tyrosine/L-aspartate decarboxylase 20
Serine decarboxylase 1
Serine decarboxylase 1 1
Serine decarboxylase 2 1
Serine decarboxylase 3 1
Sphingosine-1-phosphate lyase 2
Sphingosine-1-phosphate lyase 1 4
Tryptophan decarboxylase 2

Protein length

Min length 569
Max length 610
Mean length (sd) 575.2 (14.4)
Median length 569.0

Protein length distribution