Orthogroup:group_2434


Homologs in group_2434

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_19750 FBDBKF_19750 Morganella morganii S1 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains
EHELCC_10845 EHELCC_10845 Morganella morganii S2 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains
NLDBIP_11190 NLDBIP_11190 Morganella morganii S4 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains
LHKJJB_10165 LHKJJB_10165 Morganella morganii S3 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains
HKOGLL_16330 HKOGLL_16330 Morganella morganii S5 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains
PMI_RS12960 PMI_RS12960 Proteus mirabilis HI4320 - DNA topoisomerase III
PMI_RS18625 PMI_RS18625 Proteus mirabilis HI4320 topB type IA DNA topoisomerase

Distribution of group_2434 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2434 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2434

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2434.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 topB 6
2 - 1

Product

# Product Occurence
1 DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains 5
2 DNA topoisomerase III 1
3 type IA DNA topoisomerase 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0550 7 L Replication, recombination and repair (L) DNA topoisomerase IA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03169 7 DNA topoisomerase III [EC:5.6.2.1] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01131 7 DNA topoisomerase
PF01396 7 Topoisomerase DNA binding C4 zinc finger
PF01751 7 Toprim domain
PF13342 1 C-terminal repeat of topoisomerase

Annotations of the 124 SwissProt hits

Annotation Number of occurrences
DNA topoisomerase 1 64
DNA topoisomerase 1 type prokaryotic 1
DNA topoisomerase 3 32
DNA topoisomerase 3-alpha 5
DNA topoisomerase 3-beta 3
DNA topoisomerase 3-beta-1 2
DNA topoisomerase I, plasmid 1
Putative DNA topoisomerase 3 1
Reverse gyrase 7
Reverse gyrase 1 3
Reverse gyrase 2 4
Reverse gyrase subunit A 1

Protein length

Min length 684
Max length 772
Mean length (sd) 696.6 (33.3)
Median length 684.0

Protein length distribution