Orthogroup:group_2352



Homologs in group_2352

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_18990 FBDBKF_18990 Morganella morganii S1 truD tRNA pseudouridine(13) synthase TruD
EHELCC_18735 EHELCC_18735 Morganella morganii S2 truD tRNA pseudouridine(13) synthase TruD
NLDBIP_18570 NLDBIP_18570 Morganella morganii S4 truD tRNA pseudouridine(13) synthase TruD
LHKJJB_18605 LHKJJB_18605 Morganella morganii S3 truD tRNA pseudouridine(13) synthase TruD
HKOGLL_18340 HKOGLL_18340 Morganella morganii S5 truD tRNA pseudouridine(13) synthase TruD
F4V73_RS13900 F4V73_RS13900 Morganella psychrotolerans truD tRNA pseudouridine(13) synthase TruD
PMI_RS11035 PMI_RS11035 Proteus mirabilis HI4320 truD tRNA pseudouridine(13) synthase TruD

Distribution of group_2352 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2352 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2352

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2352.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 truD 7

Product

# Product Occurence
1 tRNA pseudouridine(13) synthase TruD 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0585 7 J Translation, ribosomal structure and biogenesis (J) tRNA(Glu) U13 pseudouridine synthase TruD

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06176 7 tRNA pseudouridine13 synthase [EC:5.4.99.27] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01142 7 tRNA pseudouridine synthase D (TruD)

Annotations of the 201 SwissProt hits

Annotation Number of occurrences
Multisubstrate pseudouridine synthase 7 2
Probable tRNA pseudouridine synthase D 30
Probable tRNA pseudouridine synthase D 1 2
Probable tRNA pseudouridine synthase D 2 2
Pseudouridylate synthase 7 homolog 4
Pseudouridylate synthase PUS7L 3
Putative pseudouridine synthase B0024.11 1
tRNA pseudouridine synthase D 157

Protein length

Min length 348
Max length 350
Mean length (sd) 348.3 (0.8)
Median length 348.0

Protein length distribution