Orthogroup:group_2336


Homologs in group_2336

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_18340 FBDBKF_18340 Morganella morganii S1 pasI RnfH family protein
EHELCC_18375 EHELCC_18375 Morganella morganii S2 pasI RnfH family protein
NLDBIP_18300 NLDBIP_18300 Morganella morganii S4 pasI RnfH family protein
LHKJJB_18495 LHKJJB_18495 Morganella morganii S3 pasI RnfH family protein
HKOGLL_18230 HKOGLL_18230 Morganella morganii S5 pasI RnfH family protein
F4V73_RS01870 F4V73_RS01870 Morganella psychrotolerans - RnfH family protein
PMI_RS09395 PMI_RS09395 Proteus mirabilis HI4320 - RnfH family protein

Distribution of group_2336 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2336 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2336

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2336.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 pasI 5
2 - 2

Product

# Product Occurence
1 RnfH family protein 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2914 7 V Defense mechanisms (V) Putative antitoxin component PasI (RatB) of the RatAB toxin-antitoxin module, ubiquitin-RnfH superfamily

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K09801 7 uncharacterized protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03658 7 RnfH family Ubiquitin

Annotations of the 114 SwissProt hits

Annotation Number of occurrences
Persistence and stress-resistance antitoxin PasI 1
Protein RnfH 86
UPF0125 protein BU253 1
UPF0125 protein BUsg_244 1
UPF0125 protein CBU_1303 1
UPF0125 protein CV_3462 1
UPF0125 protein HD_1828 1
UPF0125 protein HI_0395 1
UPF0125 protein NMA1005 1
UPF0125 protein NMB0796 1
UPF0125 protein PA4766 1
UPF0125 protein PD_1376 1
UPF0125 protein PM0166 1
UPF0125 protein PSPTO_4512 1
UPF0125 protein RSc1426 1
UPF0125 protein RatB 1
UPF0125 protein SO_1475 1
UPF0125 protein VC0395_A0376/VC395_0866 1
UPF0125 protein VC_0850 1
UPF0125 protein VP0646 1
UPF0125 protein VV0820 1
UPF0125 protein VV1_0369 1
UPF0125 protein XF_2346 1
UPF0125 protein YPO1103/y3077/YP_1053 1
UPF0125 protein YfjF 3
UPF0125 protein bbp_234 1
UPF0125 protein plu3376 1

Protein length

Min length 97
Max length 99
Mean length (sd) 98.7 (0.8)
Median length 99.0

Protein length distribution