Orthogroup:group_2259


Homologs in group_2259

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_17395 FBDBKF_17395 Morganella morganii S1 secD Preprotein translocase subunit SecD
EHELCC_17290 EHELCC_17290 Morganella morganii S2 secD Preprotein translocase subunit SecD
NLDBIP_17905 NLDBIP_17905 Morganella morganii S4 secD Preprotein translocase subunit SecD
LHKJJB_17825 LHKJJB_17825 Morganella morganii S3 secD Preprotein translocase subunit SecD
HKOGLL_17835 HKOGLL_17835 Morganella morganii S5 secD Preprotein translocase subunit SecD
F4V73_RS16570 F4V73_RS16570 Morganella psychrotolerans secD protein translocase subunit SecD
PMI_RS00375 PMI_RS00375 Proteus mirabilis HI4320 secD protein translocase subunit SecD

Distribution of group_2259 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2259 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2259

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2259.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 secD 7

Product

# Product Occurence
1 Preprotein translocase subunit SecD 5
2 protein translocase subunit SecD 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0342 7 U Intracellular trafficking, secretion, and vesicular transport (U) Preprotein translocase subunit SecD

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03072 7 preprotein translocase subunit SecD Protein export
Bacterial secretion system		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02355 7 Protein export membrane protein
PF07549 7 SecD/SecF GG Motif
PF13721 7 SecD export protein N-terminal TM region
PF21760 7 Protein translocase subunit SecDF, P1 domain, N-terminal
PF22599 7 SecDF, P1 head subdomain

Annotations of the 76 SwissProt hits

Annotation Number of occurrences
Modulator protein MzrA 1
Probable transport protein MmpL11 1
Protein translocase subunit SecD 46
Protein translocase subunit SecDF 4
Protein translocase subunit SecF 14
Protein-export membrane protein SecD 8
Protein-export membrane protein SecF 2

Protein length

Min length 604
Max length 615
Mean length (sd) 607.1 (5.4)
Median length 604.0

Protein length distribution