Orthogroup:group_2228


Homologs in group_2228

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_17045 FBDBKF_17045 Morganella morganii S1 alr alanine racemase
EHELCC_16545 EHELCC_16545 Morganella morganii S2 alr alanine racemase
NLDBIP_16755 NLDBIP_16755 Morganella morganii S4 alr alanine racemase
LHKJJB_16715 LHKJJB_16715 Morganella morganii S3 alr alanine racemase
HKOGLL_17680 HKOGLL_17680 Morganella morganii S5 alr alanine racemase
F4V73_RS18525 F4V73_RS18525 Morganella psychrotolerans alr alanine racemase
PMI_RS13515 PMI_RS13515 Proteus mirabilis HI4320 alr alanine racemase

Distribution of group_2228 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_2228 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2228

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_2228.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 alr 7

Product

# Product Occurence
1 alanine racemase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0787 7 M Cell wall/membrane/envelope biogenesis (M) Alanine racemase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01775 7 alanine racemase [EC:5.1.1.1] D-Amino acid metabolism
Metabolic pathways
Vancomycin resistance		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00842 7 Alanine racemase, C-terminal domain
PF01168 7 Alanine racemase, N-terminal domain

Annotations of the 375 SwissProt hits

Annotation Number of occurrences
Alanine racemase 315
Alanine racemase (Fragment) 1
Alanine racemase 1 11
Alanine racemase 2 8
Alanine racemase 3 2
Alanine racemase, biosynthetic 12
Alanine racemase, catabolic 12
Amino-acid racemase 2
Broad specificity amino-acid racemase 8
Lysine racemase 2
Putative alanine racemase 2 1
Serine/alanine racemase 1

Protein length

Min length 359
Max length 363
Mean length (sd) 359.6 (1.5)
Median length 359.0

Protein length distribution