Orthogroup:group_219


Homologs in group_219

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9 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_20005 FBDBKF_20005 Morganella morganii S1 - HTH cro/C1-type domain-containing protein
EHELCC_03525 EHELCC_03525 Morganella morganii S2 - HTH cro/C1-type domain-containing protein
NLDBIP_03525 NLDBIP_03525 Morganella morganii S4 - HTH cro/C1-type domain-containing protein
LHKJJB_09355 LHKJJB_09355 Morganella morganii S3 - HTH cro/C1-type domain-containing protein
HKOGLL_09620 HKOGLL_09620 Morganella morganii S5 - HTH cro/C1-type domain-containing protein
PMI_RS05155 PMI_RS05155 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator
PMI_RS07115 PMI_RS07115 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator
PMI_RS10960 PMI_RS10960 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator
PMI_RS14845 PMI_RS14845 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of group_219 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_219 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_219

Orthogroup content: 9 members

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This page summarizes the annotation of all members of the orthologous group group_219.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 9

Product

# Product Occurence
1 HTH cro/C1-type domain-containing protein 5
2 helix-turn-helix transcriptional regulator 4

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1396 9 K Transcription (K) Transcriptional regulator, contains XRE-family HTH domain

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01381 9 Helix-turn-helix

Annotations of the 6 SwissProt hits

Annotation Number of occurrences
Putative HTH-type transcriptional regulatory protein Mboo_0195 1
Uncharacterized HTH-type transcriptional regulator R00410 1
Uncharacterized HTH-type transcriptional regulator RC0668 1
Uncharacterized HTH-type transcriptional regulator RP497 1
Uncharacterized HTH-type transcriptional regulator Smed_0045 1
Uncharacterized HTH-type transcriptional regulator y4wC 1

Protein length

Min length 87
Max length 111
Mean length (sd) 103.4 (6.6)
Median length 105.0

Protein length distribution