Orthogroup:group_2112


Homologs in group_2112

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15875 FBDBKF_15875 Morganella morganii S1 clpX ATP-dependent protease ATP-binding subunit ClpX
EHELCC_18475 EHELCC_18475 Morganella morganii S2 clpX ATP-dependent protease ATP-binding subunit ClpX
NLDBIP_17310 NLDBIP_17310 Morganella morganii S4 clpX ATP-dependent protease ATP-binding subunit ClpX
LHKJJB_17350 LHKJJB_17350 Morganella morganii S3 clpX ATP-dependent protease ATP-binding subunit ClpX
HKOGLL_17045 HKOGLL_17045 Morganella morganii S5 clpX ATP-dependent protease ATP-binding subunit ClpX
F4V73_RS16435 F4V73_RS16435 Morganella psychrotolerans clpX ATP-dependent protease ATP-binding subunit ClpX
PMI_RS00560 PMI_RS00560 Proteus mirabilis HI4320 clpX ATP-dependent protease ATP-binding subunit ClpX

Distribution of group_2112 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2112 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2112

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2112.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 clpX 7

Product

# Product Occurence
1 ATP-dependent protease ATP-binding subunit ClpX 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1219 7 O Posttranslational modification, protein turnover, chaperones (O) ATP-dependent protease Clp, ATPase subunit ClpX

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03544 7 ATP-dependent Clp protease ATP-binding subunit ClpX Cell cycle - Caulobacter -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF06689 7 ClpX C4-type zinc finger
PF07724 7 AAA domain (Cdc48 subfamily)
PF10431 7 C-terminal, D2-small domain, of ClpB protein

Annotations of the 507 SwissProt hits

Annotation Number of occurrences
ATP-dependent Clp protease ATP-binding subunit ClpX 505
ATP-dependent Clp protease ATP-binding subunit ClpX 1 1
ATP-dependent Clp protease ATP-binding subunit ClpX 2 1

Protein length

Min length 423
Max length 426
Mean length (sd) 425.6 (1.1)
Median length 426.0

Protein length distribution