Orthogroup:group_1810


Homologs in group_1810

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_13425 FBDBKF_13425 Morganella morganii S1 infC translation initiation factor IF-3
EHELCC_08670 EHELCC_08670 Morganella morganii S2 infC translation initiation factor IF-3
NLDBIP_08995 NLDBIP_08995 Morganella morganii S4 infC translation initiation factor IF-3
LHKJJB_05270 LHKJJB_05270 Morganella morganii S3 infC translation initiation factor IF-3
HKOGLL_05645 HKOGLL_05645 Morganella morganii S5 infC translation initiation factor IF-3
F4V73_RS03340 F4V73_RS03340 Morganella psychrotolerans infC translation initiation factor IF-3
PMI_RS18910 PMI_RS18910 Proteus mirabilis HI4320 infC translation initiation factor IF-3

Distribution of group_1810 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1810 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1810

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1810.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 infC 7

Product

# Product Occurence
1 translation initiation factor IF-3 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0290 7 J Translation, ribosomal structure and biogenesis (J) Translation initiation factor IF-3

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02520 7 translation initiation factor IF-3 - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00707 7 Translation initiation factor IF-3, C-terminal domain
PF05198 2 Translation initiation factor IF-3, N-terminal domain

Annotations of the 312 SwissProt hits

Annotation Number of occurrences
Probable translation initiation factor, mitochondrial 1
Translation initiation factor IF-3 300
Translation initiation factor IF-3, chloroplastic 7
Translation initiation factor IF-3-like 1
Translation initiation factor IF3-1, mitochondrial 1
Translation initiation factor IF3-2, chloroplastic 1
Translation initiation factor IF3-4, chloroplastic 1

Protein length

Min length 112
Max length 179
Mean length (sd) 131.1 (32.7)
Median length 112.0

Protein length distribution