Orthogroup:group_1551


Homologs in group_1551

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_10045 FBDBKF_10045 Morganella morganii S1 holA DNA polymerase III subunit delta
EHELCC_04845 EHELCC_04845 Morganella morganii S2 holA DNA polymerase III subunit delta
NLDBIP_04845 NLDBIP_04845 Morganella morganii S4 holA DNA polymerase III subunit delta
LHKJJB_13785 LHKJJB_13785 Morganella morganii S3 holA DNA polymerase III subunit delta
HKOGLL_12750 HKOGLL_12750 Morganella morganii S5 holA DNA polymerase III subunit delta
F4V73_RS00290 F4V73_RS00290 Morganella psychrotolerans holA DNA polymerase III subunit delta
PMI_RS02125 PMI_RS02125 Proteus mirabilis HI4320 holA DNA polymerase III subunit delta

Distribution of group_1551 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1551 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1551

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1551.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 holA 7

Product

# Product Occurence
1 DNA polymerase III subunit delta 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1466 7 L Replication, recombination and repair (L) DNA polymerase III, delta subunit

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02340 7 DNA polymerase III subunit delta [EC:2.7.7.7] DNA replication
Mismatch repair
Homologous recombination		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF06144 7 DNA polymerase III, delta subunit
PF14840 7 Processivity clamp loader gamma complex DNA pol III C-term

Annotations of the 6 SwissProt hits

Annotation Number of occurrences
DNA polymerase III subunit delta 5
Uncharacterized protein aq_1104 1

Protein length

Min length 344
Max length 347
Mean length (sd) 346.6 (1.1)
Median length 347.0

Protein length distribution