Orthogroup:group_1410


Homologs in group_1410

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08710 FBDBKF_08710 Morganella morganii S1 srmB DEAD/DEAH family ATP-dependent RNA helicase
EHELCC_12815 EHELCC_12815 Morganella morganii S2 srmB DEAD/DEAH family ATP-dependent RNA helicase
NLDBIP_13155 NLDBIP_13155 Morganella morganii S4 srmB DEAD/DEAH family ATP-dependent RNA helicase
LHKJJB_13400 LHKJJB_13400 Morganella morganii S3 srmB DEAD/DEAH family ATP-dependent RNA helicase
HKOGLL_11630 HKOGLL_11630 Morganella morganii S5 srmB DEAD/DEAH family ATP-dependent RNA helicase
F4V73_RS09925 F4V73_RS09925 Morganella psychrotolerans - DEAD/DEAH family ATP-dependent RNA helicase
PMI_RS17055 PMI_RS17055 Proteus mirabilis HI4320 - DEAD/DEAH family ATP-dependent RNA helicase

Distribution of group_1410 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1410 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1410

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1410.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 srmB 5
2 - 2

Product

# Product Occurence
1 DEAD/DEAH family ATP-dependent RNA helicase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0513 7 L Replication, recombination and repair (L) Superfamily II DNA and RNA helicase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K05592 7 ATP-dependent RNA helicase DeaD [EC:3.6.4.13] RNA degradation -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00270 7 DEAD/DEAH box helicase
PF00271 7 Helicase conserved C-terminal domain
PF03880 7 DbpA RNA binding domain

Annotations of the 551 SwissProt hits

Annotation Number of occurrences
ATP-dependent RNA helicase CshA 2
ATP-dependent RNA helicase DBP2 19
ATP-dependent RNA helicase DBP2-A 2
ATP-dependent RNA helicase DBP3 15
ATP-dependent RNA helicase DBP8 1
ATP-dependent RNA helicase DDX39A 3
ATP-dependent RNA helicase DDX42 4
ATP-dependent RNA helicase DDX47 1
ATP-dependent RNA helicase DDX50 2
ATP-dependent RNA helicase DED1 1
ATP-dependent RNA helicase DHH1 11
ATP-dependent RNA helicase DRS1 1
ATP-dependent RNA helicase DbpA 4
ATP-dependent RNA helicase DeaD 11
ATP-dependent RNA helicase FAL1 20
ATP-dependent RNA helicase RhlB 121
ATP-dependent RNA helicase RhlE 1
ATP-dependent RNA helicase SUB2 6
ATP-dependent RNA helicase SrmB 2
ATP-dependent RNA helicase WM6 1
ATP-dependent RNA helicase cgh-1 1
ATP-dependent RNA helicase dbp2 10
ATP-dependent RNA helicase dbp3 8
ATP-dependent RNA helicase ddx6 1
ATP-dependent RNA helicase dhh1 8
ATP-dependent RNA helicase drs1 2
ATP-dependent RNA helicase eIF4A 31
ATP-dependent RNA helicase fal-1 1
ATP-dependent RNA helicase fal1 10
ATP-dependent RNA helicase sub2 8
ATP-dependent RNA helicase vasa 1
ATP-dependent RNA helicase-like protein DB10 1
ATP-dependent rRNA helicase RRP3 22
ATP-dependent rRNA helicase rrp-3 1
ATP-dependent rRNA helicase rrp3 10
DEAD-box ATP-dependent RNA helicase 10 3
DEAD-box ATP-dependent RNA helicase 14 2
DEAD-box ATP-dependent RNA helicase 15 2
DEAD-box ATP-dependent RNA helicase 20 2
DEAD-box ATP-dependent RNA helicase 21 2
DEAD-box ATP-dependent RNA helicase 24 2
DEAD-box ATP-dependent RNA helicase 28 2
DEAD-box ATP-dependent RNA helicase 3, chloroplastic 2
DEAD-box ATP-dependent RNA helicase 30 2
DEAD-box ATP-dependent RNA helicase 34 1
DEAD-box ATP-dependent RNA helicase 36 1
DEAD-box ATP-dependent RNA helicase 37 1
DEAD-box ATP-dependent RNA helicase 3A, chloroplastic 1
DEAD-box ATP-dependent RNA helicase 3B, chloroplastic 1
DEAD-box ATP-dependent RNA helicase 40 1
DEAD-box ATP-dependent RNA helicase 42 2
DEAD-box ATP-dependent RNA helicase 46 1
DEAD-box ATP-dependent RNA helicase 5 1
DEAD-box ATP-dependent RNA helicase 52 1
DEAD-box ATP-dependent RNA helicase 52B 1
DEAD-box ATP-dependent RNA helicase 52C 1
DEAD-box ATP-dependent RNA helicase 53 1
DEAD-box ATP-dependent RNA helicase 53, mitochondrial 1
DEAD-box ATP-dependent RNA helicase 56 2
DEAD-box ATP-dependent RNA helicase 7 1
DEAD-box ATP-dependent RNA helicase 8 1
DEAD-box ATP-dependent RNA helicase 9 1
DEAD-box ATP-dependent RNA helicase 9, mitochondrial 1
DEAD-box ATP-dependent RNA helicase CshA 24
DEAD-box ATP-dependent RNA helicase CshB 1
DEAD-box ATP-dependent RNA helicase CshE 1
DEAD-box ATP-dependent RNA helicase RhpA 2
Eukaryotic initiation factor 4A 6
Eukaryotic initiation factor 4A-1 2
Eukaryotic initiation factor 4A-10 1
Eukaryotic initiation factor 4A-11 1
Eukaryotic initiation factor 4A-14 1
Eukaryotic initiation factor 4A-15 1
Eukaryotic initiation factor 4A-2 2
Eukaryotic initiation factor 4A-3 3
Eukaryotic initiation factor 4A-7 1
Eukaryotic initiation factor 4A-8 1
Eukaryotic initiation factor 4A-9 1
Eukaryotic initiation factor 4A-I 6
Eukaryotic initiation factor 4A-I (Fragment) 1
Eukaryotic initiation factor 4A-II 7
Eukaryotic initiation factor 4A-III 12
Eukaryotic initiation factor 4A-III homolog 1
Eukaryotic initiation factor 4A-III homolog A 1
Eukaryotic initiation factor 4A-III homolog B 1
Eukaryotic initiation factor 4A-III-A 1
Eukaryotic initiation factor 4A-III-B 1
Nucleolar RNA helicase 2 3
Pre-mRNA-processing ATP-dependent RNA helicase PRP5 6
Pre-mRNA-processing ATP-dependent RNA helicase prp-5 1
Pre-mRNA-processing ATP-dependent RNA helicase prp11 1
Pre-mRNA-processing ATP-dependent RNA helicase prp5 7
Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 4
Pre-mRNA-splicing ATP-dependent RNA helicase prp28 7
Probable ATP-dependent RNA helicase DDX17 2
Probable ATP-dependent RNA helicase DDX23 2
Probable ATP-dependent RNA helicase DDX27 3
Probable ATP-dependent RNA helicase DDX4 2
Probable ATP-dependent RNA helicase DDX46 5
Probable ATP-dependent RNA helicase DDX47 3
Probable ATP-dependent RNA helicase DDX49 2
Probable ATP-dependent RNA helicase DDX5 5
Probable ATP-dependent RNA helicase DDX59 1
Probable ATP-dependent RNA helicase DDX6 4
Probable ATP-dependent RNA helicase DDX6 (Fragment) 1
Probable ATP-dependent RNA helicase MJ0669 1
Probable ATP-dependent RNA helicase ddx17 1
Probable ATP-dependent RNA helicase ddx27 1
Probable ATP-dependent RNA helicase ddx42 1
Probable ATP-dependent RNA helicase ddx47 1
Probable ATP-dependent RNA helicase ddx49 1
Probable ATP-dependent RNA helicase ddx6 2
Probable ATP-dependent RNA helicase vasa-like 1
Probable eukaryotic initiation factor 4A 5
Putative ATP-dependent RNA helicase Pl10 1
Putative ATP-dependent RNA helicase T26G10.1 1
Putative ATP-dependent RNA helicase ste13 1
Putative DEAD-box RNA helicase HEL64 1
RNA helicase CrhR 1
Spliceosome RNA helicase DDX39B 8
Spliceosome RNA helicase DDX39B homolog 1
Spliceosome RNA helicase Ddx39b 2

Protein length

Min length 611
Max length 665
Mean length (sd) 635.9 (15.7)
Median length 635.0

Protein length distribution