Orthogroup:group_1358


Homologs in group_1358

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08415 FBDBKF_08415 Morganella morganii S1 rsgA small ribosomal subunit biogenesis GTPase RsgA
EHELCC_13110 EHELCC_13110 Morganella morganii S2 rsgA small ribosomal subunit biogenesis GTPase RsgA
NLDBIP_13450 NLDBIP_13450 Morganella morganii S4 rsgA small ribosomal subunit biogenesis GTPase RsgA
LHKJJB_13105 LHKJJB_13105 Morganella morganii S3 rsgA small ribosomal subunit biogenesis GTPase RsgA
HKOGLL_11925 HKOGLL_11925 Morganella morganii S5 rsgA small ribosomal subunit biogenesis GTPase RsgA
F4V73_RS09625 F4V73_RS09625 Morganella psychrotolerans rsgA small ribosomal subunit biogenesis GTPase RsgA
PMI_RS16690 PMI_RS16690 Proteus mirabilis HI4320 rsgA small ribosomal subunit biogenesis GTPase RsgA

Distribution of group_1358 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1358 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1358

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1358.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rsgA 7

Product

# Product Occurence
1 small ribosomal subunit biogenesis GTPase RsgA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1162 7 J Translation, ribosomal structure and biogenesis (J) Ribosome biogenesis GTPase RsgA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06949 7 ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] Thiamine metabolism
Metabolic pathways		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03193 7 RsgA GTPase

Annotations of the 282 SwissProt hits

Annotation Number of occurrences
Ribosome biogenesis GTPase A 1
Small ribosomal subunit biogenesis GTPase RsgA 258
Small ribosomal subunit biogenesis GTPase RsgA 1 10
Small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial 1
Small ribosomal subunit biogenesis GTPase RsgA 2 10
Small ribosomal subunit biogenesis GTPase RsgA 2, mitochondrial 1
Uncharacterized protein in rhdA 5'region (Fragment) 1

Protein length

Min length 349
Max length 352
Mean length (sd) 349.4 (1.1)
Median length 349.0

Protein length distribution