Orthogroup:group_1356


Homologs in group_1356

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08405 FBDBKF_08405 Morganella morganii S1 mscM miniconductance mechanosensitive channel MscM
EHELCC_13120 EHELCC_13120 Morganella morganii S2 mscM miniconductance mechanosensitive channel MscM
NLDBIP_13460 NLDBIP_13460 Morganella morganii S4 mscM miniconductance mechanosensitive channel MscM
LHKJJB_13095 LHKJJB_13095 Morganella morganii S3 mscM miniconductance mechanosensitive channel MscM
HKOGLL_11935 HKOGLL_11935 Morganella morganii S5 mscM miniconductance mechanosensitive channel MscM
F4V73_RS09615 F4V73_RS09615 Morganella psychrotolerans mscM miniconductance mechanosensitive channel MscM
PMI_RS16680 PMI_RS16680 Proteus mirabilis HI4320 mscM miniconductance mechanosensitive channel MscM

Distribution of group_1356 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_1356 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1356

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_1356.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 mscM 7

Product

# Product Occurence
1 miniconductance mechanosensitive channel MscM 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3264 7 M Cell wall/membrane/envelope biogenesis (M) Small-conductance mechanosensitive channel MscK

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K22051 7 miniconductance mechanosensitive channel - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00924 7 Mechanosensitive ion channel, beta-domain
PF12794 7 Mechanosensitive ion channel inner membrane domain 1
PF12795 7 Mechanosensitive ion channel porin domain
PF21082 7 Mechanosensitive ion channel MscS, C-terminal
PF21088 7 Mechanosensitive ion channel, transmembrane helices 2/3

Annotations of the 24 SwissProt hits

Annotation Number of occurrences
Large-conductance mechanosensitive channel MscMJLR 1
Low conductance mechanosensitive channel YnaI 2
Mechanosensitive channel MscK 1
Mechanosensitive ion channel protein 1, mitochondrial 1
Miniconductance mechanosensitive channel MscM 1
Small-conductance mechanosensitive channel 6
Small-conductance mechanosensitive channel MscMJ 1
Uncharacterized MscS family protein AF_1546 1
Uncharacterized MscS family protein BU452 1
Uncharacterized MscS family protein BUsg_437 1
Uncharacterized MscS family protein HI_0195.1 1
Uncharacterized MscS family protein YfkC 1
Uncharacterized MscS family protein YhdY 1
Uncharacterized MscS family protein YkuT 1
Uncharacterized MscS family protein aq_812 1
Uncharacterized MscS family protein bbp_402 1
Uncharacterized MscS family protein slr0639 1
Uncharacterized protein Cgl1270/cg1434 1

Protein length

Min length 1111
Max length 1120
Mean length (sd) 1118.6 (3.4)
Median length 1120.0

Protein length distribution