Orthogroup:group_1316


Homologs in group_1316

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08145 FBDBKF_08145 Morganella morganii S1 hdfR HTH-type transcriptional regulator HdfR
EHELCC_13385 EHELCC_13385 Morganella morganii S2 hdfR HTH-type transcriptional regulator HdfR
NLDBIP_13720 NLDBIP_13720 Morganella morganii S4 hdfR HTH-type transcriptional regulator HdfR
LHKJJB_12835 LHKJJB_12835 Morganella morganii S3 hdfR HTH-type transcriptional regulator HdfR
HKOGLL_12195 HKOGLL_12195 Morganella morganii S5 hdfR HTH-type transcriptional regulator HdfR
F4V73_RS18670 F4V73_RS18670 Morganella psychrotolerans hdfR HTH-type transcriptional regulator HdfR
PMI_RS16380 PMI_RS16380 Proteus mirabilis HI4320 hdfR HTH-type transcriptional regulator HdfR

Distribution of group_1316 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1316 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1316

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1316.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hdfR 7

Product

# Product Occurence
1 HTH-type transcriptional regulator HdfR 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0583 7 K Transcription (K) DNA-binding transcriptional regulator, LysR family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K23773 7 LysR family transcriptional regulator, flagellar master operon regulator - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00126 7 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 7 LysR substrate binding domain

Annotations of the 230 SwissProt hits

Annotation Number of occurrences
Carbapenem-hydrolyzing beta-lactamase transcriptional activator 2
DNA-binding transcriptional dual regulator OxyR 1
Glycine cleavage system transcriptional activator 3
Glycine cleavage system transcriptional activator homolog 1
HTH-type transcriptional activator AllS 11
HTH-type transcriptional activator AmpR 4
HTH-type transcriptional activator BauR 1
HTH-type transcriptional activator CmpR 3
HTH-type transcriptional activator IlvY 3
HTH-type transcriptional regulator AbaB 1
HTH-type transcriptional regulator AbgR 1
HTH-type transcriptional regulator AdmX 1
HTH-type transcriptional regulator AlsR 1
HTH-type transcriptional regulator ArgP 9
HTH-type transcriptional regulator BbuR 1
HTH-type transcriptional regulator BenM 1
HTH-type transcriptional regulator BlaA 1
HTH-type transcriptional regulator BsdA 1
HTH-type transcriptional regulator BudR 1
HTH-type transcriptional regulator BudR (Fragment) 1
HTH-type transcriptional regulator CatM 1
HTH-type transcriptional regulator CatR 1
HTH-type transcriptional regulator CbbR 3
HTH-type transcriptional regulator CfxR 1
HTH-type transcriptional regulator CitR 1
HTH-type transcriptional regulator ClcR 1
HTH-type transcriptional regulator CrgA 2
HTH-type transcriptional regulator CynR 2
HTH-type transcriptional regulator CysB 1
HTH-type transcriptional regulator CysB (Fragment) 1
HTH-type transcriptional regulator CysL 1
HTH-type transcriptional regulator CzcR 7
HTH-type transcriptional regulator DgdR 1
HTH-type transcriptional regulator DsdC 1
HTH-type transcriptional regulator EstR 1
HTH-type transcriptional regulator GalR 1
HTH-type transcriptional regulator GbpR 1
HTH-type transcriptional regulator GltR 1
HTH-type transcriptional regulator HdfR 48
HTH-type transcriptional regulator IlvR 1
HTH-type transcriptional regulator IlvY 1
HTH-type transcriptional regulator LysG 3
HTH-type transcriptional regulator MetR 7
HTH-type transcriptional regulator NmoR 1
HTH-type transcriptional regulator PcaQ 2
HTH-type transcriptional regulator PecT 1
HTH-type transcriptional regulator PgrR 1
HTH-type transcriptional regulator PhcA 1
HTH-type transcriptional regulator ShiR 1
HTH-type transcriptional regulator TdcA 3
HTH-type transcriptional regulator TfdT 1
HTH-type transcriptional regulator TrpI 2
HTH-type transcriptional regulator TtuA 2
HTH-type transcriptional regulator XapR 1
HTH-type transcriptional regulator YjiE 1
HTH-type transcriptional regulator YofA 2
HTH-type transcriptional regulator YtlI 1
Hca operon transcriptional activator HcaR 1
Hydrogen peroxide-inducible genes activator 5
Iron-regulated virulence regulatory protein IrgB 2
Nitrogen assimilation regulatory protein nac 1
Probable HTH-type transcriptional regulator LeuO 1
Probable HTH-type transcriptional regulator LrhA 2
Probable HTH-type transcriptional regulator LrrA 1
Probable RuBisCO transcriptional regulator 15
Probable cat1 operon transcriptional activator 1
Probable hydrogen peroxide-inducible genes activator 2
Probable nitrogen assimilation transcriptional activator 2
Putative HTH-type transcriptional regulator protein PtxE (Fragment) 1
Putative transcriptional regulator 1
RuBisCO operon transcriptional regulator 2
SDS degradation transcriptional activation protein 1
Small neutral protease regulatory protein 3
Transcriptional activator protein NhaR 3
Transcriptional dual regulator GltC 1
Uncharacterized HTH-type transcriptional regulator MJ0300 1
Uncharacterized HTH-type transcriptional regulator VC_2383 1
Uncharacterized HTH-type transcriptional regulator YafC 1
Uncharacterized HTH-type transcriptional regulator YahB 1
Uncharacterized HTH-type transcriptional regulator YbhD 1
Uncharacterized HTH-type transcriptional regulator YcaN 1
Uncharacterized HTH-type transcriptional regulator YcgK 1
Uncharacterized HTH-type transcriptional regulator YdcI 1
Uncharacterized HTH-type transcriptional regulator YdhB 2
Uncharacterized HTH-type transcriptional regulator YeeY 1
Uncharacterized HTH-type transcriptional regulator YfeR 2
Uncharacterized HTH-type transcriptional regulator YfiE 1
Uncharacterized HTH-type transcriptional regulator YgfI 1
Uncharacterized HTH-type transcriptional regulator YhjC 1
Uncharacterized HTH-type transcriptional regulator YkuM 1
Uncharacterized HTH-type transcriptional regulator YneJ 1
Uncharacterized HTH-type transcriptional regulator YnfL 1
Uncharacterized HTH-type transcriptional regulator YraN 1
Uncharacterized HTH-type transcriptional regulator YusT 1
Uncharacterized HTH-type transcriptional regulator YvbU 1
Uncharacterized HTH-type transcriptional regulator YwbI 1
Uncharacterized HTH-type transcriptional regulator YwqM 1
Uncharacterized HTH-type transcriptional regulator YxjO 1
Uncharacterized HTH-type transcriptional regulator YybE 1
Uncharacterized HTH-type transcriptional regulator in ibpB-leuC intergenic region 1
Uncharacterized HTH-type transcriptional regulator in lacR 5'region (Fragment) 1
Uncharacterized HTH-type transcriptional regulator y4mQ 1

Protein length

Min length 270
Max length 274
Mean length (sd) 270.6 (1.5)
Median length 270.0

Protein length distribution