Orthogroup:group_1309


Homologs in group_1309

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08020 FBDBKF_08020 Morganella morganii S1 dksA RNA polymerase-binding protein DksA
EHELCC_13850 EHELCC_13850 Morganella morganii S2 dksA RNA polymerase-binding protein DksA
NLDBIP_14295 NLDBIP_14295 Morganella morganii S4 dksA RNA polymerase-binding protein DksA
LHKJJB_08555 LHKJJB_08555 Morganella morganii S3 dksA RNA polymerase-binding protein DksA
HKOGLL_08105 HKOGLL_08105 Morganella morganii S5 dksA RNA polymerase-binding protein DksA
F4V73_RS12970 F4V73_RS12970 Morganella psychrotolerans dksA RNA polymerase-binding protein DksA
PMI_RS00965 PMI_RS00965 Proteus mirabilis HI4320 dksA RNA polymerase-binding protein DksA

Distribution of group_1309 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1309 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1309

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1309.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 dksA 7

Product

# Product Occurence
1 RNA polymerase-binding protein DksA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1734 7 K Transcription (K) RNA polymerase-binding transcription factor DksA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06204 7 RNA polymerase-binding transcription factor Biofilm formation - Escherichia coli -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01258 7 Prokaryotic dksA/traR C4-type zinc finger
PF21157 7 DnaK suppressor protein DksA, N-terminal domain

Annotations of the 14 SwissProt hits

Annotation Number of occurrences
General stress protein 16O 1
RNA polymerase-binding transcription factor DksA 12
Uncharacterized protein YteA 1

Protein length

Unique protein length 151

Protein length distribution