Orthogroup:group_1262


Homologs in group_1262

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07360 FBDBKF_07360 Morganella morganii S1 helD DNA helicase IV
EHELCC_03610 EHELCC_03610 Morganella morganii S2 helD DNA helicase IV
NLDBIP_03610 NLDBIP_03610 Morganella morganii S4 helD DNA helicase IV
LHKJJB_09440 LHKJJB_09440 Morganella morganii S3 helD DNA helicase IV
HKOGLL_09535 HKOGLL_09535 Morganella morganii S5 helD DNA helicase IV
F4V73_RS01545 F4V73_RS01545 Morganella psychrotolerans helD DNA helicase IV
PMI_RS03875 PMI_RS03875 Proteus mirabilis HI4320 helD DNA helicase IV

Distribution of group_1262 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1262 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1262

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1262.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 helD 7

Product

# Product Occurence
1 DNA helicase IV 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0210 7 L Replication, recombination and repair (L) Superfamily I DNA or RNA helicase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03658 7 DNA helicase IV [EC:5.6.2.4] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00580 7 UvrD/REP helicase N-terminal domain
PF12462 7 DNA helicase IV / RNA helicase N terminal
PF13361 7 UvrD-like helicase C-terminal domain

Annotations of the 168 SwissProt hits

Annotation Number of occurrences
ATP-dependent DNA helicase PcrA 12
ATP-dependent DNA helicase Rep 6
ATP-dependent DNA helicase SRS2 1
ATP-dependent DNA helicase SRS2-like protein At4g25120 1
ATP-dependent DNA helicase UvrD1 4
ATP-dependent DNA helicase UvrD2 4
ATP-dependent DNA helicase srs2 1
ATP-dependent helicase/nuclease subunit A 117
DNA helicase II 4
DNA helicase IV 1
Exonuclease/helicase subunit RexA 2
Probable DNA helicase II homolog 7
Probable DNA helicase MPN_340 1
Putative ATP-dependent DNA helicase YjcD 1
RecBCD enzyme subunit RecB 6

Protein length

Min length 683
Max length 684
Mean length (sd) 683.9 (0.4)
Median length 684.0

Protein length distribution