Orthogroup:group_1236



Homologs in group_1236

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07195 FBDBKF_07195 Morganella morganii S1 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase
EHELCC_03775 EHELCC_03775 Morganella morganii S2 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase
NLDBIP_03775 NLDBIP_03775 Morganella morganii S4 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase
LHKJJB_09605 LHKJJB_09605 Morganella morganii S3 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase
HKOGLL_09370 HKOGLL_09370 Morganella morganii S5 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase
F4V73_RS01380 F4V73_RS01380 Morganella psychrotolerans kdsB 3-deoxy-manno-octulosonate cytidylyltransferase
PMI_RS03550 PMI_RS03550 Proteus mirabilis HI4320 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase

Distribution of group_1236 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1236 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1236

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1236.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 kdsB 7

Product

# Product Occurence
1 3-deoxy-manno-octulosonate cytidylyltransferase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1212 7 M Cell wall/membrane/envelope biogenesis (M) CMP-2-keto-3-deoxyoctulosonic acid synthetase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K00979 7 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] Lipopolysaccharide biosynthesis
Metabolic pathways
Biosynthesis of nucleotide sugars
CMP-KDO biosynthesis

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02348 7 Cytidylyltransferase

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG038845 7 NeuA protein VF0473 Motility

Annotations of the 404 SwissProt hits

Annotation Number of occurrences
3-deoxy-manno-octulosonate cytidylyltransferase 366
3-deoxy-manno-octulosonate cytidylyltransferase (Fragment) 1
3-deoxy-manno-octulosonate cytidylyltransferase 1 6
3-deoxy-manno-octulosonate cytidylyltransferase 2 6
3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial 1
8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase 19
Bifunctional protein GlmU 2
CMP-N,N'-diacetyllegionaminic acid synthase 1
Pseudaminic acid cytidylyltransferase 2

Protein length

Min length 249
Max length 253
Mean length (sd) 249.6 (1.5)
Median length 249.0

Protein length distribution