Orthogroup:group_113


Homologs in group_113

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11 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01355 FBDBKF_01355 Morganella morganii S1 tssM type VI secretion system membrane subunit TssM
EHELCC_00190 EHELCC_00190 Morganella morganii S2 tssM type VI secretion system membrane subunit TssM
NLDBIP_03270 NLDBIP_03270 Morganella morganii S4 tssM type VI secretion system membrane subunit TssM
LHKJJB_04785 LHKJJB_04785 Morganella morganii S3 tssM type VI secretion system membrane subunit TssM
HKOGLL_02260 HKOGLL_02260 Morganella morganii S5 tssM type VI secretion system membrane subunit TssM
F4V73_RS00025 F4V73_RS00025 Morganella psychrotolerans tssM type VI secretion system membrane subunit TssM
F4V73_RS02315 F4V73_RS02315 Morganella psychrotolerans tssM type VI secretion system membrane subunit TssM
F4V73_RS06970 F4V73_RS06970 Morganella psychrotolerans - ImcF-related family protein
F4V73_RS09335 F4V73_RS09335 Morganella psychrotolerans tssM type VI secretion system membrane subunit TssM
F4V73_RS16760 F4V73_RS16760 Morganella psychrotolerans - ImcF-related family protein
PMI_RS03620 PMI_RS03620 Proteus mirabilis HI4320 tssM type VI secretion system membrane subunit TssM

Distribution of group_113 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_113 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_113

Orthogroup content: 11 members

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This page summarizes the annotation of all members of the orthologous group group_113.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 tssM 9
2 - 2

Product

# Product Occurence
1 type VI secretion system membrane subunit TssM 9
2 ImcF-related family protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3523 11 U Intracellular trafficking, secretion, and vesicular transport (U) Type VI protein secretion system component VasK

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11891 11 type VI secretion system protein ImpL Biofilm formation - Pseudomonas aeruginosa
Bacterial secretion system		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF06744 11 Type VI secretion protein IcmF C2-like domain
PF06761 11 Intracellular multiplication and human macrophage-killing
PF14331 10 IcmF-related N-terminal domain
PF21070 8 Type VI secretion protein IcmF helical domain

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG041088 1 type VI secretion system membrane subunit TssM VF1036 Effector delivery system

Annotations of the 1 SwissProt hits

Annotation Number of occurrences
Type VI secretion system component TssM1 1

Protein length

Min length 1068
Max length 1299
Mean length (sd) 1168.7 (60.6)
Median length 1182.0

Protein length distribution