Orthogroup:group_1083


Homologs in group_1083

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06155 FBDBKF_06155 Morganella morganii S1 recB exodeoxyribonuclease V subunit beta
EHELCC_09200 EHELCC_09200 Morganella morganii S2 recB exodeoxyribonuclease V subunit beta
NLDBIP_09580 NLDBIP_09580 Morganella morganii S4 recB exodeoxyribonuclease V subunit beta
LHKJJB_08175 LHKJJB_08175 Morganella morganii S3 recB exodeoxyribonuclease V subunit beta
HKOGLL_07725 HKOGLL_07725 Morganella morganii S5 recB exodeoxyribonuclease V subunit beta
F4V73_RS15760 F4V73_RS15760 Morganella psychrotolerans recB exodeoxyribonuclease V subunit beta
PMI_RS11420 PMI_RS11420 Proteus mirabilis HI4320 recB exodeoxyribonuclease V subunit beta

Distribution of group_1083 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1083 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1083

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1083.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 recB 7

Product

# Product Occurence
1 exodeoxyribonuclease V subunit beta 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1074 7 L Replication, recombination and repair (L) 3’-5’ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03582 7 exodeoxyribonuclease V beta subunit [EC:3.1.11.5] Homologous recombination -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00580 7 UvrD/REP helicase N-terminal domain
PF12705 7 PD-(D/E)XK nuclease superfamily
PF13361 7 UvrD-like helicase C-terminal domain

Annotations of the 181 SwissProt hits

Annotation Number of occurrences
ATP-dependent DNA helicase PcrA 12
ATP-dependent DNA helicase Rep 3
ATP-dependent DNA helicase UvrD1 4
ATP-dependent DNA helicase UvrD2 4
ATP-dependent DNA helicase srs2 1
ATP-dependent helicase/nuclease subunit A 136
DNA helicase II 3
Exonuclease/helicase subunit RexA 2
Probable DNA helicase II homolog 2
Probable DNA helicase MPN_340 1
Putative ATP-dependent DNA helicase YjcD 1
RecBCD enzyme subunit RecB 12

Protein length

Min length 1204
Max length 1212
Mean length (sd) 1205.9 (2.7)
Median length 1205.0

Protein length distribution