Orthogroup:group_1048



Homologs in group_1048

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05925 FBDBKF_05925 Morganella morganii S1 tilS tRNA(Ile)-lysidine synthase TilS/MesJ
EHELCC_08970 EHELCC_08970 Morganella morganii S2 tilS tRNA(Ile)-lysidine synthase TilS/MesJ
NLDBIP_09350 NLDBIP_09350 Morganella morganii S4 tilS tRNA(Ile)-lysidine synthase TilS/MesJ
LHKJJB_08405 LHKJJB_08405 Morganella morganii S3 tilS tRNA(Ile)-lysidine synthase TilS/MesJ
HKOGLL_07955 HKOGLL_07955 Morganella morganii S5 tilS tRNA(Ile)-lysidine synthase TilS/MesJ
F4V73_RS15970 F4V73_RS15970 Morganella psychrotolerans tilS tRNA lysidine(34) synthetase TilS
PMI_RS11195 PMI_RS11195 Proteus mirabilis HI4320 tilS tRNA lysidine(34) synthetase TilS

Distribution of group_1048 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1048 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1048

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1048.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 tilS 7

Product

# Product Occurence
1 tRNA(Ile)-lysidine synthase TilS/MesJ 5
2 tRNA lysidine(34) synthetase TilS 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0037 7 J Translation, ribosomal structure and biogenesis (J) tRNA(Ile)-lysidine synthase TilS/MesJ

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K04075 7 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01171 7 PP-loop family
PF09179 7 TilS substrate binding domain
PF11734 7 TilS substrate C-terminal domain

Annotations of the 320 SwissProt hits

Annotation Number of occurrences
Bifunctional protein TilS/HprT 3
Cytoplasmic tRNA 2-thiolation protein 1 1
Probable tRNA(Ile)-lysidine synthase 1
tRNA(Ile)-lysidine synthase 298
tRNA(Ile)-lysidine synthase, chloroplastic 10
tRNA-cytidine(32) 2-sulfurtransferase 7

Protein length

Min length 441
Max length 460
Mean length (sd) 457.3 (7.2)
Median length 460.0

Protein length distribution