Orthogroup:group_0


Homologs in group_0

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31 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_00180 FBDBKF_00180 Morganella morganii S1 cspC Cold shock protein, CspA family
FBDBKF_00840 FBDBKF_00840 Morganella morganii S1 cspE transcription antiterminator/RNA stability regulator CspE
FBDBKF_10120 FBDBKF_10120 Morganella morganii S1 cspE transcription antiterminator/RNA stability regulator CspE
FBDBKF_12525 FBDBKF_12525 Morganella morganii S1 cspC Cold shock protein, CspA family
FBDBKF_16430 FBDBKF_16430 Morganella morganii S1 cspE transcription antiterminator/RNA stability regulator CspE
EHELCC_00705 EHELCC_00705 Morganella morganii S2 cspE transcription antiterminator/RNA stability regulator CspE
EHELCC_01365 EHELCC_01365 Morganella morganii S2 cspC Cold shock protein, CspA family
EHELCC_04920 EHELCC_04920 Morganella morganii S2 cspE transcription antiterminator/RNA stability regulator CspE
EHELCC_08295 EHELCC_08295 Morganella morganii S2 cspE transcription antiterminator/RNA stability regulator CspE
NLDBIP_02095 NLDBIP_02095 Morganella morganii S4 cspC Cold shock protein, CspA family
NLDBIP_02755 NLDBIP_02755 Morganella morganii S4 cspE transcription antiterminator/RNA stability regulator CspE
NLDBIP_04920 NLDBIP_04920 Morganella morganii S4 cspE transcription antiterminator/RNA stability regulator CspE
NLDBIP_08620 NLDBIP_08620 Morganella morganii S4 cspE transcription antiterminator/RNA stability regulator CspE
LHKJJB_03610 LHKJJB_03610 Morganella morganii S3 cspC Cold shock protein, CspA family
LHKJJB_04270 LHKJJB_04270 Morganella morganii S3 cspE transcription antiterminator/RNA stability regulator CspE
LHKJJB_05645 LHKJJB_05645 Morganella morganii S3 cspE transcription antiterminator/RNA stability regulator CspE
LHKJJB_13710 LHKJJB_13710 Morganella morganii S3 cspE transcription antiterminator/RNA stability regulator CspE
HKOGLL_02775 HKOGLL_02775 Morganella morganii S5 cspE transcription antiterminator/RNA stability regulator CspE
HKOGLL_03435 HKOGLL_03435 Morganella morganii S5 cspC Cold shock protein, CspA family
HKOGLL_05270 HKOGLL_05270 Morganella morganii S5 cspE transcription antiterminator/RNA stability regulator CspE
HKOGLL_12825 HKOGLL_12825 Morganella morganii S5 cspE transcription antiterminator/RNA stability regulator CspE
F4V73_RS00215 F4V73_RS00215 Morganella psychrotolerans cspE transcription antiterminator/RNA stability regulator CspE
F4V73_RS02950 F4V73_RS02950 Morganella psychrotolerans cspE transcription antiterminator/RNA stability regulator CspE
F4V73_RS06830 F4V73_RS06830 Morganella psychrotolerans cspE transcription antiterminator/RNA stability regulator CspE
F4V73_RS07335 F4V73_RS07335 Morganella psychrotolerans cspA RNA chaperone/antiterminator CspA
F4V73_RS07755 F4V73_RS07755 Morganella psychrotolerans - cold-shock protein
PMI_RS02060 PMI_RS02060 Proteus mirabilis HI4320 cspE transcription antiterminator/RNA stability regulator CspE
PMI_RS03965 PMI_RS03965 Proteus mirabilis HI4320 - cold-shock protein
PMI_RS04480 PMI_RS04480 Proteus mirabilis HI4320 - cold-shock protein
PMI_RS04745 PMI_RS04745 Proteus mirabilis HI4320 cspA RNA chaperone/antiterminator CspA
PMI_RS08180 PMI_RS08180 Proteus mirabilis HI4320 cspE transcription antiterminator/RNA stability regulator CspE

Distribution of group_0 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_0 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_0

Orthogroup content: 31 members

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This page summarizes the annotation of all members of the orthologous group group_0.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 cspC 6
2 cspE 20
3 cspA 2
4 - 3

Product

# Product Occurence
1 Cold shock protein, CspA family 6
2 transcription antiterminator/RNA stability regulator CspE 20
3 RNA chaperone/antiterminator CspA 2
4 cold-shock protein 3

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1278 31 K Transcription (K) Cold shock protein, CspA family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03704 31 cold shock protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00313 31 'Cold-shock' DNA-binding domain

Annotations of the 182 SwissProt hits

Annotation Number of occurrences
B box-binding protein 1
Calcium-regulated heat stable protein 1 2
Calcium-regulated heat-stable protein 1 1
Cold shock domain-containing protein 3 1
Cold shock domain-containing protein 4 1
Cold shock domain-containing protein C2 3
Cold shock domain-containing protein CG9705 1
Cold shock domain-containing protein E1 3
Cold shock protein 1
Cold shock protein 1 2
Cold shock protein 2 2
Cold shock protein CapA (Fragment) 1
Cold shock protein CapB 2
Cold shock protein CspA 21
Cold shock protein CspB 3
Cold shock protein CspB (Fragment) 1
Cold shock protein CspC 1
Cold shock protein CspD 1
Cold shock protein CspV 1
Cold shock protein ScoF 1
Cold shock-like protein 2
Cold shock-like protein 7.0 1
Cold shock-like protein CspA 11
Cold shock-like protein CspB 4
Cold shock-like protein CspC 11
Cold shock-like protein CspD 9
Cold shock-like protein CspE 10
Cold shock-like protein CspE (Fragment) 1
Cold shock-like protein CspF 2
Cold shock-like protein CspG 5
Cold shock-like protein CspH 6
Cold shock-like protein CspI 2
Cold shock-like protein CspJ 3
Cold shock-like protein CspLA 2
Cold shock-like protein CspLB 2
Glycine-rich protein 2 1
Major cold shock protein 7
Major cold shock protein (Fragment) 9
Major cold shock protein CspA 4
Major cold-shock protein (Fragment) 2
Probable cold shock protein A 4
Probable cold shock protein y4cH 1
Protein lin-28 3
Protein lin-28 homolog 1
Protein lin-28 homolog A 6
Protein lin-28 homolog B 3
Protein lin-28 homolog B (Fragment) 1
RNA-binding protein Unr 1
Temperature acclimation protein A (Fragment) 1
Temperature acclimation protein B (Fragment) 1
Y-box factor homolog 1
Y-box-binding protein 1 8
Y-box-binding protein 2 2
Y-box-binding protein 2-A 1
Y-box-binding protein 2-B 1
Y-box-binding protein 3 3

Protein length

Min length 69
Max length 70
Mean length (sd) 69.6 (0.5)
Median length 70.0

Protein length distribution