Homologs in group_4756

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4756

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4756

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8YDZ0 1.69e-36 140 32 3 229 3 virB10 Type IV secretion system protein virB10 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
P0C531 1.99e-36 140 32 3 229 3 virB10 Type IV secretion system protein virB10 Brucella abortus biovar 1 (strain 9-941)
Q2YJ81 1.99e-36 140 32 3 229 3 virB10 Type IV secretion system protein virB10 Brucella abortus (strain 2308)
Q9RPX5 2.1e-36 140 32 3 229 1 virB10 Type IV secretion system protein virB10 Brucella suis biovar 1 (strain 1330)
Q6G2B2 3.88e-36 139 40 3 197 1 virB10 Type IV secretion system protein virB10 Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1)
Q0GK35 5.44e-36 138 32 3 229 3 virB10 Type IV secretion system protein virB10 Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)
Q6FYW1 3.84e-33 130 37 3 197 3 virB10 Type IV secretion system protein virB10 Bartonella quintana (strain Toulouse)
P17800 3.5e-28 117 31 6 248 1 virB10 Protein virB10 Agrobacterium fabrum (strain C58 / ATCC 33970)
P05359 1.04e-27 115 30 6 233 3 virB10 Protein virB10 Agrobacterium tumefaciens (strain 15955)
P09783 2.16e-27 115 30 7 262 3 virB10 Protein virB10 Rhizobium radiobacter
Q7W2T8 7.86e-18 87 32 5 185 3 ptlG Type IV secretion system protein PtlG homolog Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
Q7VSX4 9.86e-18 87 32 5 185 2 ptlG Type IV secretion system protein PtlG Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Q7WDT6 1.1e-17 87 32 5 185 3 ptlG Type IV secretion system protein PtlG homolog Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
P54917 4.86e-09 61 23 10 325 3 trbI Conjugal transfer protein TrbI Rhizobium radiobacter
P55406 2.03e-07 56 23 6 211 3 trbI Probable conjugal transfer protein TrbI Sinorhizobium fredii (strain NBRC 101917 / NGR234)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18585
Feature type CDS
Gene virB10
Product VirB10/TraB/TrbI family type IV secretion system protein
Location 10345 - 11547 (strand: 1)
Length 1203 (nucleotides) / 400 (amino acids)

Contig

Accession NC_010555
Length 36289 nucleotides
Topology circular
Plasmid True

Orthology

Orthogroup group_4756
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF03743 Bacterial conjugation TrbI-like protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2948 Intracellular trafficking, secretion, and vesicular transport (U) U Type IV secretory pathway, VirB10 component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03195 type IV secretion system protein VirB10 Bacterial secretion system -

Protein Sequence

MTDEQKPKTAAELENEMLAVRENVSTNNHIEDEDTAETPKPRLGIHSLKKTFKGKLLLGGIFVILLAGAAVYNFPDILRGMFSSEKTTQDDTINTTKSNRLTDLNKDTAFDPAEASVSSEVKNNKTESASASTSDGGAKVVNVPSAPATFSRSLAVRIGSGGTGSQNNQNTNGEDTAAVSTVPTTTETEKRSLSAIKVLPYDPNLFIPENTSIPCSLDRRFVSDLSGSLTCTVIEDIYSANGNVRLIDKGTRASLIYKAGTLKHGQGRVFIMATKLRTRQQPFIDIPLIDTAAAGALGEMGADGWIDTHFWDRFSGAMMLGMIPDLTQGVSGAIKNNKDNQTDYTANSRQAFADIAKEAFANSVGIPPTLYKNQGEIITLITGEDLDFSTIYQLKMSKGK

Flanking regions ( +/- flanking 50bp)

GTTAGCTGATTCTGATACGGTTTCCCCTGATGTGAAAAAGGAAATAAAAAATGACTGATGAACAAAAACCAAAAACCGCTGCTGAGTTAGAAAATGAAATGCTTGCGGTAAGAGAAAACGTCAGCACGAATAATCATATAGAAGATGAAGATACTGCGGAAACGCCGAAACCTCGTTTAGGTATTCACTCACTTAAGAAAACGTTTAAAGGTAAATTACTTTTAGGCGGGATTTTTGTAATCCTACTGGCGGGTGCGGCTGTTTACAATTTTCCTGATATTCTTCGGGGGATGTTTTCATCAGAAAAAACAACACAGGACGACACCATTAATACGACGAAAAGCAACCGTCTGACAGATTTGAATAAAGATACGGCGTTTGATCCGGCAGAAGCATCTGTTTCATCGGAAGTGAAAAACAATAAGACTGAGTCGGCTTCTGCCAGTACGTCAGACGGAGGTGCAAAGGTTGTTAATGTTCCGTCTGCTCCGGCAACATTCAGCCGTTCACTGGCTGTCAGAATTGGTTCAGGGGGAACAGGAAGCCAAAATAATCAAAATACTAATGGAGAAGATACTGCGGCAGTCAGTACCGTTCCGACCACGACAGAGACAGAAAAACGTTCACTGAGCGCGATTAAAGTGTTGCCGTATGACCCTAATCTGTTTATTCCTGAAAATACTTCAATTCCCTGCTCGTTGGACAGGCGTTTTGTGTCTGATTTAAGTGGTTCGCTGACCTGCACAGTGATTGAGGATATTTACAGCGCAAACGGCAATGTTCGGCTGATAGATAAAGGTACTCGGGCGAGTCTGATTTATAAAGCGGGTACGCTGAAACACGGACAGGGGCGCGTTTTCATTATGGCGACAAAACTCAGAACCCGCCAACAGCCTTTTATTGATATTCCGTTGATAGATACGGCAGCAGCGGGGGCATTAGGTGAAATGGGGGCGGATGGCTGGATTGATACCCATTTTTGGGACAGATTCAGCGGAGCAATGATGCTTGGAATGATCCCCGATCTTACTCAGGGAGTCAGTGGAGCAATTAAAAACAATAAAGACAATCAGACGGACTATACCGCTAACAGCCGTCAGGCATTTGCGGATATTGCCAAAGAAGCGTTTGCTAACAGTGTCGGTATTCCGCCTACGCTATACAAAAATCAGGGGGAGATTATTACGTTGATTACAGGGGAAGATCTCGATTTTTCGACTATTTACCAGTTAAAAATGAGTAAAGGCAAATGAGTAACAATAACCACATTGTTAATGAAATAGCGGCACAGTTCTTTGGTGAG