Homologs in group_4755

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4755

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4755

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8YDZ1 8.74e-36 133 27 6 307 3 virB9 Type IV secretion system protein virB9 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q9RPX6 2.47e-35 132 27 7 309 2 virB9 Type IV secretion system protein virB9 Brucella suis biovar 1 (strain 1330)
P0C533 2.47e-35 132 27 7 309 3 virB9 Type IV secretion system protein virB9 Brucella abortus biovar 1 (strain 9-941)
Q2YJ79 2.47e-35 132 27 7 309 3 virB9 Type IV secretion system protein virB9 Brucella abortus (strain 2308)
Q7W2T9 3.78e-25 104 27 9 276 3 ptlF Type IV secretion system protein PtlF homolog Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
Q7WDT7 3.78e-25 104 27 9 276 3 ptlF Type IV secretion system protein PtlF homolog Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
Q7VSX5 3.86e-25 104 27 9 276 1 ptlF Type IV secretion system protein PtlF Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P17799 2.31e-17 84 24 9 319 1 virB9 Protein virB9 Agrobacterium fabrum (strain C58 / ATCC 33970)
Q6G2B3 5.11e-17 82 27 14 325 1 virB9 Type IV secretion system protein virB9 Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1)
Q6FYW2 6.19e-16 79 26 12 315 3 virB9 Type IV secretion system protein virB9 Bartonella quintana (strain Toulouse)
P0A3W6 6.39e-15 77 24 10 320 1 virB9 Protein virB9 Rhizobium radiobacter
P0A3W7 6.39e-15 77 24 10 320 3 virB9 Protein virB9 Agrobacterium tumefaciens (strain 15955)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18580
Feature type CDS
Gene -
Product TrbG/VirB9 family P-type conjugative transfer protein
Location 9429 - 10352 (strand: 1)
Length 924 (nucleotides) / 307 (amino acids)

Contig

Accession NC_010555
Length 36289 nucleotides
Topology circular
Plasmid True

Orthology

Orthogroup group_4755
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF03524 Conjugal transfer protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3504 Intracellular trafficking, secretion, and vesicular transport (U) U Type IV secretory pathway, VirB9 components

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03204 type IV secretion system protein VirB9 Bacterial secretion system -

Protein Sequence

MNKNIIALFLSVFVIAMNANAASKPTGSRFDPRNQIISYNPSDTTVINSAAGYVSVLVFDDDEKVMETDVGFEQGWNIRSSENKVYIKVTPVTQTIEAVNDDGETEQKQMVFDPESDLNQFKTNLFIVTTKRNYSVELNAKTFKEPEKISFVVNYRYPNEVRKEKEKLEQQRIAELKRKQEINEINKSFENAKVPRNWKYYQRVANNSEYIKPDYAYDDGRFTYFGFNPSKKIPSVFVQYGEQETITNPTVEKKGDYTVVIIHQTNDRWVLRSGDQVVGVENKGYGLVRLADSDTVSPDVKKEIKND

Flanking regions ( +/- flanking 50bp)

GGGTTTGTTGTTACCAGTTATTTAACAGAAAAGGAAAACAGGGGTTAAAAATGAATAAAAATATAATCGCTTTATTCCTGTCTGTTTTCGTTATCGCCATGAATGCAAATGCAGCCAGTAAACCAACAGGCAGTCGGTTCGACCCCCGTAATCAGATAATTAGCTATAATCCATCTGATACAACCGTAATCAATAGTGCTGCTGGTTATGTTTCTGTCTTGGTTTTCGACGATGACGAAAAAGTGATGGAAACCGATGTTGGATTTGAGCAGGGCTGGAACATCAGGTCATCAGAAAATAAAGTGTACATAAAAGTCACGCCTGTGACACAAACCATTGAAGCGGTAAATGATGATGGTGAAACAGAACAAAAACAAATGGTTTTTGATCCGGAGTCAGATTTAAATCAATTCAAAACAAATTTGTTTATTGTGACAACAAAAAGAAATTACAGTGTTGAATTAAATGCAAAAACATTTAAAGAACCTGAGAAAATTTCGTTTGTTGTAAATTATCGTTATCCGAACGAGGTGAGAAAGGAAAAAGAAAAACTTGAGCAACAACGTATTGCGGAATTAAAAAGAAAGCAGGAAATAAATGAAATAAATAAATCATTTGAAAATGCCAAAGTTCCGCGAAACTGGAAATATTATCAGCGCGTGGCTAACAACAGCGAATACATTAAACCGGATTATGCTTATGATGATGGGCGATTTACTTATTTTGGTTTTAACCCGTCCAAAAAAATCCCAAGCGTCTTTGTTCAGTATGGTGAGCAGGAAACAATAACTAATCCGACTGTTGAAAAGAAAGGTGATTATACCGTTGTGATTATACATCAGACAAATGATCGTTGGGTTTTACGTTCAGGTGATCAGGTTGTTGGTGTGGAGAATAAAGGGTATGGACTTGTCCGGTTAGCTGATTCTGATACGGTTTCCCCTGATGTGAAAAAGGAAATAAAAAATGACTGATGAACAAAAACCAAAAACCGCTGCTGAGTTAGAAAATGAAATGCTTGCGG