Homologs in group_4754

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4754

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4754

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7VSX6 9.86e-25 100 32 3 189 1 ptlE Type IV secretion system protein PtlE Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Q7W2U0 9.86e-25 100 32 3 189 3 ptlE Type IV secretion system protein PtlE homolog Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
Q7WDT8 1.38e-24 100 32 3 189 3 ptlE Type IV secretion system protein PtlE homolog Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
Q6FYW3 3.83e-21 91 28 5 213 1 virB8 Type IV secretion system protein virB8 Bartonella quintana (strain Toulouse)
Q7CEG3 1.65e-19 87 27 5 211 1 virB8 Type IV secretion system protein virB8 Brucella suis biovar 1 (strain 1330)
Q9RPX7 1.65e-19 87 27 5 211 3 virB8 Type IV secretion system protein virB8 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
P0C532 1.65e-19 87 27 5 211 3 virB8 Type IV secretion system protein virB8 Brucella abortus biovar 1 (strain 9-941)
Q2YJ78 1.65e-19 87 27 5 211 3 virB8 Type IV secretion system protein virB8 Brucella abortus (strain 2308)
Q6G2B4 5.71e-19 85 27 5 213 1 virB8 Type IV secretion system protein virB8 Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1)
Q9ZDN8 8.68e-08 54 26 7 188 4 RP289 Uncharacterized protein RP289 Rickettsia prowazekii (strain Madrid E)
P05357 1.14e-06 51 25 6 216 3 virB8 Protein virB8 Agrobacterium tumefaciens (strain 15955)
P09781 1.22e-06 51 25 6 216 3 virB8 Protein virB8 Rhizobium radiobacter
P17798 2.41e-06 50 27 9 218 1 virB8 Protein virB8 Agrobacterium fabrum (strain C58 / ATCC 33970)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18575
Feature type CDS
Gene -
Product type IV secretion system protein
Location 8719 - 9426 (strand: 1)
Length 708 (nucleotides) / 235 (amino acids)

Contig

Accession NC_010555
Length 36289 nucleotides
Topology circular
Plasmid True

Orthology

Orthogroup group_4754
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF04335 VirB8 protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3736 Intracellular trafficking, secretion, and vesicular transport (U) U Type IV secretory pathway, component VirB8

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03203 type IV secretion system protein VirB8 Bacterial secretion system -

Protein Sequence

MKKIQFFKNKETAIENAALFEDVIYKKEQRLKWVYLGTGILGALIGVLSLIALIIVLPLKETETYIYSVDNQTGRAEEMTKVTNSTLNENEAVSRFFVDTYLKAREGYNYFRLQQDYDLVMSYSSDSVGNEYTAIFKSPQAPQTIYRKGEQTVKVDVLSKIISDSSKADDPDKLASVRYKRTITEVLTGSKREEFWVARITFRFIPENNLTREERDSNPLGFVVTSYLTEKENRG

Flanking regions ( +/- flanking 50bp)

ATTAGAGCCTGTTAATACTCCGGAAGTAATGAATACCGCAGGGAAATGAAATGAAAAAAATTCAATTTTTTAAAAACAAAGAAACTGCCATAGAAAACGCGGCGTTATTTGAAGATGTGATTTATAAAAAAGAACAACGTCTGAAATGGGTTTACTTAGGAACGGGTATTTTAGGGGCTTTAATTGGTGTGCTGAGTCTGATTGCTCTTATTATTGTTTTACCGCTGAAAGAAACGGAAACATATATTTATTCCGTTGATAATCAGACTGGCAGAGCAGAAGAAATGACAAAAGTCACGAACAGTACATTAAATGAAAATGAAGCGGTAAGTCGTTTCTTTGTTGATACCTATCTCAAAGCTAGAGAGGGATATAATTATTTTCGTTTGCAACAGGATTATGATCTGGTCATGTCATACAGCAGTGACAGTGTGGGAAATGAATACACTGCTATATTTAAATCTCCACAAGCACCGCAGACGATTTACAGGAAAGGTGAACAAACGGTTAAGGTTGACGTTTTATCAAAAATTATTTCGGATTCATCAAAAGCTGACGACCCTGATAAGCTTGCCAGTGTTCGTTACAAACGGACAATTACCGAAGTTTTAACGGGTTCTAAACGTGAAGAATTTTGGGTTGCAAGAATCACATTTCGCTTTATTCCTGAAAACAACCTGACACGGGAAGAAAGAGACAGCAATCCATTGGGGTTTGTTGTTACCAGTTATTTAACAGAAAAGGAAAACAGGGGTTAAAAATGAATAAAAATATAATCGCTTTATTCCTGTCTGTTTTCGTTATCGCC