Homologs in group_2174

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16355 FBDBKF_16355 90.4 Morganella morganii S1 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
EHELCC_16390 EHELCC_16390 90.4 Morganella morganii S2 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
NLDBIP_16950 NLDBIP_16950 90.4 Morganella morganii S4 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
LHKJJB_16870 LHKJJB_16870 90.4 Morganella morganii S3 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
HKOGLL_16970 HKOGLL_16970 90.4 Morganella morganii S5 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
F4V73_RS17220 F4V73_RS17220 91.6 Morganella psychrotolerans trmL tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL

Distribution of the homologs in the orthogroup group_2174

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2174

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
C7BSD3 3.93e-102 293 83 1 167 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77)
Q74Y93 2.23e-96 278 81 2 167 1 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Yersinia pestis
P0AGJ7 4.95e-91 265 75 2 167 1 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Escherichia coli (strain K12)
P0AGJ8 4.95e-91 265 75 2 167 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P44868 1.33e-82 243 70 1 164 1 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A0KEQ6 1.14e-71 216 62 2 164 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
Q21LN7 3.83e-64 196 59 2 163 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)
A0KAS4 5.09e-64 196 56 1 163 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Burkholderia cenocepacia (strain HI2424)
B8CHC9 5.11e-62 191 53 1 162 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Shewanella piezotolerans (strain WP3 / JCM 13877)
A3NR15 8.35e-62 191 54 1 163 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Burkholderia pseudomallei (strain 1106a)
Q0BBL1 1.26e-61 190 54 1 163 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Burkholderia ambifaria (strain ATCC BAA-244 / DSM 16087 / CCUG 44356 / LMG 19182 / AMMD)
C6X9I5 1.06e-60 187 51 1 164 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Methylovorus glucosotrophus (strain SIP3-4)
Q12E50 9.16e-60 186 55 1 163 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Polaromonas sp. (strain JS666 / ATCC BAA-500)
A1WBM9 1.85e-53 169 51 1 157 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Acidovorax sp. (strain JS42)
O31590 3.91e-37 128 43 3 162 3 cspR Putative tRNA (cytidine(34)-2'-O)-methyltransferase Bacillus subtilis (strain 168)
P69001 4.9e-35 123 42 4 168 3 lin0934 Putative tRNA (cytidine(34)-2'-O)-methyltransferase Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
P32813 1.64e-34 121 41 3 164 3 None Putative tRNA (cytidine(34)-2'-O)-methyltransferase Geobacillus stearothermophilus
Q721N0 1.82e-34 122 41 4 168 3 LMOf2365_0956 Putative tRNA (cytidine(34)-2'-O)-methyltransferase Listeria monocytogenes serotype 4b (strain F2365)
Q042B4 2.89e-33 119 40 4 162 3 LGAS_1346 Putative RNA (cytidine(34)-2'-O)-methyltransferase Lactobacillus gasseri (strain ATCC 33323 / DSM 20243 / BCRC 14619 / CIP 102991 / JCM 1131 / KCTC 3163 / NCIMB 11718 / NCTC 13722 / AM63)
P74516 1.31e-32 116 40 3 159 3 slr0992 Putative tRNA (cytidine(34)-2'-O)-methyltransferase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P75257 5.02e-32 115 38 3 163 3 MPN_521 Putative tRNA (cytidine(34)-2'-O)-methyltransferase Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
Q48V41 6.41e-31 113 38 5 167 3 M28_Spy0301 Putative tRNA (cytidine(34)-2'-O)-methyltransferase Streptococcus pyogenes serotype M28 (strain MGAS6180)
P47588 1.56e-29 109 36 4 166 3 MG346 Putative tRNA (cytidine(34)-2'-O)-methyltransferase Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
A2RKW7 7.26e-29 107 39 4 166 3 llmg_1343 Putative tRNA (cytidine(34)-2'-O)-methyltransferase Lactococcus lactis subsp. cremoris (strain MG1363)
D7A3L6 3.07e-26 100 34 2 158 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Ancylobacter novellus (strain ATCC 8093 / DSM 506 / JCM 20403 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIMB 10456)
B2IBT9 1.29e-25 99 33 2 156 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIMB 8712)
Q5SM16 0.00023 43 26 7 162 1 trmH tRNA (guanosine(18)-2'-O)-methyltransferase Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q72GI1 0.00023 43 26 7 162 1 trmH tRNA (guanosine(18)-2'-O)-methyltransferase Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS15760
Feature type CDS
Gene trmL
Product tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL
Location 3500457 - 3500960 (strand: -1)
Length 504 (nucleotides) / 167 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2174
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00588 SpoU rRNA Methylase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0219 Translation, ribosomal structure and biogenesis (J) J tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] - -

Protein Sequence

MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQHHDYYAFLESEGLSPDNAQSPTGARLFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYVLDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQLGYPGALLRD

Flanking regions ( +/- flanking 50bp)

TAAAACAGTTCGTTGATTGGTATAAAAACTATTATCAAGTAAAATAAATAATGCTCAATATCGTCTTATTTGAACCCGAAATTCCACCGAATACGGGTAATATTATCCGCCTGTGTGCCAACACAGGCTTTCATCTTCATTTGATCCAACCATTGGGTTTTACTTGGGATGATAAACGGCTACGTCGTGCAGGGCTTGATTATCGTGAGTTTGCTGATATCAAACAGCATCACGATTATTATGCTTTTTTAGAAAGTGAAGGATTAAGCCCTGATAATGCACAATCCCCGACAGGTGCGCGGTTGTTTGCATTAACCACTAAAGGTACTCCCGCCCATAGTAATGTAAGTTATCAAGATGGGGATTATCTGCTATTTGGCCCTGAGACACGAGGTTTACCACCTTATGTGTTGGATAATATGCCAACACAACAAAAAATCCGTGTGCCAATGTTAGCGGATAGCCGCAGTATGAATCTTTCTAATACGGTTGCCGTGGTTGTTTTTGAGGCATGGCGCCAATTAGGCTATCCGGGTGCGTTATTAAGAGATTGATTTAGTGGTTAGTTTGGTTAATTAAAGTTATTTTAATTCATACTTATTAC