Homologs in group_4659

Help

0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4659

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_4659

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P17334 0.0 814 88 0 452 1 chbC PTS system N,N'-diacetylchitobiose-specific EIIC component Escherichia coli (strain K12)
O05507 9.27e-65 218 31 12 453 1 gmuC PTS system oligo-beta-mannoside-specific EIIC component Bacillus subtilis (strain 168)
P46317 1.17e-62 213 32 16 478 2 licC Lichenan permease IIC component Bacillus subtilis (strain 168)
P39584 1.46e-61 209 31 14 472 3 ywbA Putative permease IIC component YwbA Bacillus subtilis (strain 168)
Q9CJ32 2.53e-58 202 30 9 494 2 celB PTS system cellobiose-specific EIIC component Lactococcus lactis subsp. lactis (strain IL1403)
Q45400 3.56e-58 201 31 13 482 3 celB PTS system cellobiose-specific EIIC component Geobacillus stearothermophilus
A2RJV0 5.67e-35 138 27 14 481 3 llmg_0963 PTS system galactose-specific EIIC component Lactococcus lactis subsp. cremoris (strain MG1363)
P24400 5.95e-33 134 25 16 463 1 lacE PTS system lactose-specific EIICB component Lacticaseibacillus casei
Q99S77 2.5e-29 124 27 21 474 1 lacE PTS system lactose-specific EIICB component Staphylococcus aureus (strain N315)
Q8CNF7 4.27e-29 123 26 20 474 3 lacE PTS system lactose-specific EIICB component Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HM40 4.27e-29 123 26 20 474 3 lacE PTS system lactose-specific EIICB component Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q7A092 7.66e-29 122 26 21 474 3 lacE PTS system lactose-specific EIICB component Staphylococcus aureus (strain MW2)
Q6G7C4 7.66e-29 122 26 21 474 3 lacE PTS system lactose-specific EIICB component Staphylococcus aureus (strain MSSA476)
Q6GEN9 7.66e-29 122 26 21 474 3 lacE PTS system lactose-specific EIICB component Staphylococcus aureus (strain MRSA252)
Q931G6 7.66e-29 122 26 21 474 3 lacE PTS system lactose-specific EIICB component Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HE15 7.66e-29 122 26 21 474 3 lacE PTS system lactose-specific EIICB component Staphylococcus aureus (strain COL)
Q4L869 1.43e-28 122 26 20 474 3 lacE PTS system lactose-specific EIICB component Staphylococcus haemolyticus (strain JCSC1435)
P11162 4.17e-28 120 26 21 475 1 lacE PTS system lactose-specific EIICB component Staphylococcus aureus
P50976 1.2e-27 119 27 16 471 3 lacE PTS system lactose-specific EIICB component Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
P23531 1.03e-26 116 27 19 475 2 lacE PTS system lactose-specific EIICB component Lactococcus lactis subsp. lactis

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS14610
Feature type CDS
Gene chbC
Product PTS N,N'-diacetylchitobiose transporter subunit IIC
Location 3237914 - 3239272 (strand: -1)
Length 1359 (nucleotides) / 452 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4659
Orthogroup size 1
N. genomes 1

Actions

Genomic region

Domains

PF02378 Phosphotransferase system, EIIC

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1455 Carbohydrate transport and metabolism (G) G Phosphotransferase system cellobiose-specific component IIC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02761 cellobiose PTS system EIIC component Starch and sucrose metabolism
Phosphotransferase system (PTS)		 -

Protein Sequence

MSKVIGSLEKVLLPFAVKIGKQPHVNAIKNGFIRLMPLTLAGAMFVLINNVFLSFGEGSFFYSLGIRLDASTIETLNGFKAIGGNVYNGTLGIMSLMAPFFIGMALAEERKVDPIAAGLLSIAAFMTVTPYDAGGAYAVGANWLGGANIISGIIIGLVVAEMFTFIVRRNWVIRLPDSVPASVSRSFSALIPGFIILSIMGIISWGLAHYGTHFHQIILDSISTPLASLGSVVGWAYVIFTSLLWFFGIHGSLALAALDSGIMTPWALENVSIYTEYGSVEAALAAGKTFHLWAKPMLDSFIFLGGTGATLGLILAIFIASRRADHRQVAKLALPAGLFQINEPIIFGLPVIMNPVMFIPFILIQPILAAITVTAYYLGIIPPVTNIAPWTMPTGLGAFFNTNGSIAALLLALFNLAVATLIYLPFVIISNKAQTEIDKEESEEDIANALKF

Flanking regions ( +/- flanking 50bp)

GAATTTTTCAGCTAGCCGAGCAATTAGCGGCATTTTAAGGGTATTTTTCTATGAGTAAAGTCATTGGTTCACTTGAAAAGGTACTCCTTCCTTTTGCGGTTAAAATTGGAAAGCAACCTCATGTTAATGCGATAAAAAATGGTTTTATCCGTTTAATGCCATTAACACTTGCCGGGGCAATGTTTGTACTTATCAATAATGTTTTTCTCAGTTTTGGTGAGGGCTCCTTTTTTTACTCTCTTGGTATTCGTTTAGATGCCTCAACAATTGAAACACTTAATGGTTTCAAAGCCATAGGTGGTAATGTCTATAACGGTACGTTGGGAATAATGTCATTGATGGCGCCGTTCTTTATTGGTATGGCGTTGGCGGAAGAGAGAAAAGTCGACCCTATTGCGGCGGGATTACTTTCTATCGCCGCCTTTATGACGGTAACACCTTATGACGCTGGTGGCGCTTATGCTGTGGGGGCGAACTGGTTAGGAGGTGCCAATATTATCTCAGGGATTATTATTGGCCTTGTGGTTGCCGAAATGTTTACCTTTATAGTGCGTCGTAATTGGGTTATCCGTTTGCCCGATAGTGTACCTGCCTCCGTTTCGCGCTCTTTTTCTGCCTTAATTCCTGGTTTTATTATTTTATCAATTATGGGAATTATCTCTTGGGGATTAGCGCATTACGGTACACATTTCCATCAAATCATTTTAGATTCTATTTCAACGCCATTGGCTTCGTTAGGATCAGTTGTTGGGTGGGCTTACGTTATTTTTACCTCTTTGCTGTGGTTCTTTGGTATTCATGGTTCACTGGCGCTGGCGGCACTTGATAGCGGTATTATGACACCTTGGGCATTAGAAAACGTCTCTATTTATACCGAGTATGGTTCAGTTGAGGCGGCACTTGCTGCAGGCAAAACGTTCCATCTTTGGGCAAAACCGATGCTAGATTCGTTTATCTTCTTAGGAGGAACAGGGGCGACGTTAGGTCTGATATTAGCTATCTTTATTGCATCGCGTCGAGCAGATCACCGTCAAGTGGCGAAGTTAGCATTACCTGCGGGTCTATTCCAAATTAATGAACCTATTATTTTTGGTTTACCTGTGATTATGAATCCAGTGATGTTTATTCCTTTTATTCTTATTCAGCCAATCCTTGCTGCTATTACCGTAACCGCTTATTACCTTGGGATTATTCCGCCGGTCACAAATATTGCACCTTGGACGATGCCAACAGGGTTAGGGGCATTTTTTAATACCAATGGCAGTATTGCCGCACTGTTATTAGCACTCTTTAACTTAGCTGTTGCAACACTGATTTATCTGCCTTTTGTGATTATTTCGAATAAAGCACAAACCGAAATTGATAAAGAAGAAAGTGAAGAAGATATTGCTAATGCATTGAAATTTTAACGAATAGACAATGGCTGTGCAGCGCTTATTTTGCACAGCTAAGCACCAAA