Homologs in group_4642

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4642

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4642

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q05459 1.54e-28 100 65 1 75 3 vagC Virulence-associated protein VagC Salmonella dublin
Q46558 2.19e-06 43 36 2 72 3 vapB Virulence-associated protein B Dichelobacter nodosus
Q4UNB3 2.14e-05 41 35 2 67 1 vapB2 Antitoxin VapB2 Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS14235
Feature type CDS
Gene vapB
Product type II toxin-antitoxin system VapB family antitoxin
Location 3157183 - 3157416 (strand: -1)
Length 234 (nucleotides) / 77 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4642
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF04014 Antidote-toxin recognition MazE, bacterial antitoxin

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4456 Function unknown (S) S Virulence-associated protein VagC (function unknown)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K18829 antitoxin VapB - -

Protein Sequence

MRTRTVAVFKNGSNRAIRLPKDFDFDGVNELEISRDGDCIILRPVKPNWISLQNEEKADSDFLLERDDVIEEGRVIL

Flanking regions ( +/- flanking 50bp)

GTCACACGAAGGCATATATTTGGCATATGCTAACGTAAGAGGTATCTGATATGAGAACGAGAACTGTAGCTGTATTTAAAAACGGAAGTAACCGAGCCATTCGCTTACCTAAAGATTTCGATTTTGATGGTGTCAATGAACTCGAGATAAGCCGAGATGGGGATTGTATTATTTTACGCCCTGTAAAACCTAACTGGATTTCATTACAAAACGAAGAAAAAGCCGACAGTGATTTCTTGCTTGAACGCGATGATGTTATTGAAGAAGGACGAGTTATTCTGTGAAAAAAGTCTATATGCTTGATACAAACATTTGTTCTTTTATCATGCGAGAG