Homologs in group_4641

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4641

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4641

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O06662 1.53e-28 104 39 2 133 1 vapC tRNA(fMet)-specific endonuclease VapC Shigella flexneri
Q4QNL7 4.8e-25 95 36 2 134 1 vapC1 Ribonuclease VapC1 Haemophilus influenzae (strain 86-028NP)
E4QWH2 4.8e-25 95 36 2 134 1 vapC1 Ribonuclease VapC1 Haemophilus influenzae (strain R2866)
Q57122 1.67e-24 94 35 2 134 1 vapC1 Ribonuclease VapC1 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8ZM86 6.21e-24 92 37 2 132 1 vapC tRNA(fMet)-specific endonuclease VapC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q4UNB2 1.81e-23 91 37 2 133 1 vapC2 Ribonuclease VapC2 Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
P71363 7.45e-19 79 36 4 133 3 vapC2 Ribonuclease VapC2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q4QLW0 7.45e-19 79 36 4 133 3 vapC Ribonuclease VapC Haemophilus influenzae (strain 86-028NP)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS14230
Feature type CDS
Gene -
Product type II toxin-antitoxin system VapC family toxin
Location 3156767 - 3157186 (strand: -1)
Length 420 (nucleotides) / 139 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4641
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF01850 PIN domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1487 Defense mechanisms (V) V Ribonuclease/mRNA interferase VapC, contains PIN domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K18828 tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] - -

Protein Sequence

MKKVYMLDTNICSFIMREQPISLLEKLQKCVMNHDTIVISAITYSEMRFGAIGKKASPKHNRLVDAFCERVDAILAWDKAAVDATTVIKKCLSDVGLPIGNNDSAIAGHAVAVNAILVTNNTREFSRVEGLKIEDWTHV

Flanking regions ( +/- flanking 50bp)

GATTTCTTGCTTGAACGCGATGATGTTATTGAAGAAGGACGAGTTATTCTGTGAAAAAAGTCTATATGCTTGATACAAACATTTGTTCTTTTATCATGCGAGAGCAACCTATTTCTTTGCTCGAAAAACTTCAGAAATGTGTAATGAACCACGATACTATTGTCATATCAGCGATTACTTATTCAGAGATGCGCTTTGGAGCAATAGGAAAAAAAGCATCACCTAAACACAATCGTTTGGTTGATGCTTTCTGTGAACGCGTTGACGCGATTTTGGCATGGGATAAAGCGGCGGTAGACGCAACTACCGTGATAAAAAAATGCTTATCTGATGTGGGATTGCCCATAGGAAATAATGATAGCGCGATTGCTGGTCATGCTGTCGCGGTTAATGCAATATTGGTAACAAATAATACCCGTGAATTTTCACGAGTTGAAGGACTAAAAATAGAGGACTGGACTCATGTTTGATATTTTTGGGATGCGTTGCCGTTTTTATTTTTATAACACTAAAAAGCCAG