Homologs in group_3875

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS01420 PMI_RS01420 24.3 Proteus mirabilis HI4320 - hypothetical protein

Distribution of the homologs in the orthogroup group_3875

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3875

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS13425
Feature type CDS
Gene -
Product winged helix family transcriptional regulator
Location 2973920 - 2974780 (strand: -1)
Length 861 (nucleotides) / 286 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3875
Orthogroup size 2
N. genomes 1

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Genomic region

Domains

PF00486 Transcriptional regulatory protein, C terminal

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3710 Transcription (K) K DNA-binding winged helix-turn-helix (wHTH) domain

Protein Sequence

MKYRINASIYYDATDGAISLEKGDVDTHLSITANALLFYFIQNPGVVNRDEVLKRVWDDNGLVSSNSNLNQYLSLLRKTFRHYGIENIIVTIAKGRLEFNPDISVELIDDSTLLPVTQTNDHEGEANKSNTTSPIETSLSSEPDNLDSELEKEPQLSATSPQKPEICWYLASIGFLFGAIFLVVIIFLNQHQSKPITLTPLTHNDCELLSNEAMINSSVSDNYIRNFDAVRKKLNLQCVKGERFVFFYGDKLQTNGLGRVFLAHCAKNEDNPFSYCDNYFYYSWKY

Flanking regions ( +/- flanking 50bp)

ATGGCCGACACAGCAAATCAGTCATGTTAATTAGGATGAATGAGGGCACAATGAAATACAGAATAAATGCCTCAATTTATTACGACGCAACGGATGGCGCGATATCGTTAGAAAAAGGTGACGTTGATACACATCTGTCTATTACCGCTAATGCGTTACTCTTTTATTTTATTCAAAATCCCGGTGTAGTAAATCGTGATGAAGTATTAAAACGCGTGTGGGATGACAATGGGCTAGTTTCTTCAAATAGTAATTTAAACCAATATTTAAGTTTATTGCGTAAAACATTTCGTCATTATGGTATTGAAAATATTATTGTCACTATCGCCAAAGGGCGACTAGAGTTTAATCCTGATATCTCTGTTGAATTAATTGATGACTCAACACTGTTACCTGTTACGCAAACAAATGATCACGAAGGTGAAGCAAATAAAAGTAATACAACATCACCCATTGAGACATCATTATCATCCGAGCCTGATAATCTAGACAGTGAATTAGAAAAAGAGCCTCAATTATCGGCAACATCGCCACAAAAACCAGAAATTTGTTGGTATTTAGCCAGTATTGGTTTTTTATTTGGCGCCATATTTCTTGTGGTGATCATCTTTTTAAATCAGCATCAATCAAAGCCTATCACATTAACACCTCTCACCCATAATGATTGTGAATTACTCTCTAACGAGGCCATGATTAACTCCTCTGTCAGTGATAATTATATTCGCAATTTTGACGCTGTAAGAAAGAAGCTTAATTTACAGTGTGTGAAAGGGGAGCGCTTTGTTTTTTTCTATGGTGATAAATTACAAACTAATGGCTTAGGGCGTGTCTTTTTAGCGCATTGCGCTAAGAACGAAGATAATCCATTTAGCTATTGCGATAATTACTTTTACTATTCTTGGAAATACTAATGAAAATCTCAGGGAAACTTTTATGTTTTTTATCGGCCCTGATTTTTATC