Homologs in group_4582

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4582

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4582

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q01723 0.000326 45 29 1 88 3 sctC Type 3 secretion system secretin Pseudomonas syringae pv. syringae

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS12200
Feature type CDS
Gene -
Product type-F conjugative transfer system secretin TraK
Location 2696730 - 2697626 (strand: -1)
Length 897 (nucleotides) / 298 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4582
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF06586 TraK protein

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12066 conjugal transfer pilus assembly protein TraK - -

Protein Sequence

MRTKISRWMTPSLIAISLSGVLLSQASYADVELPIVPASVMKQSATANPPTQTNTASTDVPTTLLMTPGINELIPVALGHLNRIVTPFESPQVRTTSDAQTQIKGNVVYVATDKESPVSLYITPPGQEAPALSVTLVPRRIPPREITLAIDGQQWPIKGVVNRKAATWETAQPYVDNLRDLLRRLALNELPQGYDIRLAGQTDTSPKCFQPGLKFGFKQGQIVSGHYFTVYVGLVESFADEPIEASELACHAPDIVASAYWPRNILLPGEKTELYVVVRNHREEAVESQRPSLLVGGE

Flanking regions ( +/- flanking 50bp)

GAAGCGAGTTCGTGAAAAGTTGACCCAAGAGCAAAACCGGAGGGTGAATGATGCGAACCAAAATTAGTCGATGGATGACACCAAGCTTAATCGCAATTAGCTTGAGTGGCGTCCTGTTATCACAAGCGTCGTATGCAGACGTGGAATTGCCGATTGTGCCAGCCAGTGTGATGAAGCAGTCTGCTACTGCAAATCCACCGACTCAAACCAATACGGCTTCAACGGATGTGCCAACAACGCTGCTGATGACACCGGGGATTAATGAACTGATCCCTGTAGCACTTGGCCATCTGAACCGGATTGTGACGCCGTTTGAATCGCCTCAGGTAAGAACAACCAGTGATGCTCAGACGCAAATCAAGGGGAATGTTGTATATGTGGCCACGGACAAAGAATCACCGGTTTCACTTTACATCACTCCGCCTGGTCAGGAAGCGCCCGCATTATCAGTCACCTTAGTACCTCGTCGTATTCCACCGCGTGAAATCACCTTAGCTATTGATGGTCAGCAGTGGCCTATTAAGGGCGTCGTGAACCGAAAAGCCGCCACTTGGGAAACGGCTCAGCCATACGTCGATAACCTACGTGACTTACTCAGACGCCTTGCACTAAATGAGTTACCACAAGGCTATGACATCCGTTTAGCTGGCCAAACTGACACAAGCCCGAAATGTTTTCAGCCGGGCTTAAAGTTTGGTTTTAAGCAGGGGCAAATTGTGTCGGGACATTACTTCACCGTCTATGTAGGACTGGTTGAAAGCTTTGCCGATGAGCCGATAGAAGCCAGTGAATTAGCCTGTCATGCACCAGATATAGTGGCAAGTGCTTACTGGCCACGCAATATCTTGTTGCCGGGTGAAAAGACTGAGTTGTATGTGGTTGTTCGCAATCATCGTGAAGAAGCGGTGGAAAGTCAGCGACCTTCGCTTCTTGTGGGAGGTGAATAACGATGAAAGCACAATGGGAGCAAATGAGCCCGAACATGAAGCGGGGTCTA