Homologs in group_4557

Help

0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4557

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_4557

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P15069 2.08e-39 150 26 15 461 3 traH Protein TraH Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS12030
Feature type CDS
Gene -
Product conjugal transfer protein TraH
Location 2659391 - 2660779 (strand: -1)
Length 1389 (nucleotides) / 462 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4557
Orthogroup size 1
N. genomes 1

Actions

Genomic region

Domains

PF06122 Conjugative relaxosome accessory transposon protein

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12072 conjugative transfer pilus assembly protein TraH - -

Protein Sequence

MKKVFRVSLIACAIGFSSMSQASLQQEMNQLFGSMTNTTAPGVFESQRRGVISGGSVVVRNRIMNENLVSMVPPSFQAGCGGIDMFAGSLSFVNADQFVQLLRSVAANAKGYAFQLALSAMCEKCSQHMETLQKKIQQLNEYFGNSCQMAQGVVNDTLAAFGKKGQTEASMLSSLKGAGDIFTSWSESNGKNPYENASSVAASDVNKTIKGNLVWRALKRHSASSWFASGDDRFLEAVMSVTGSIIVGDLANAADGQGKAPKLTRLNGNKVTIEHLIHGGNVAMYRCDTVTQDGCLNPTITNVTLTGLSTQVENLLLGTGSSNGIIFKFARNTGAASTTEKAFMTSAPASIGGMIRTLSALNEGAARSFASRAAPFIAVEMARALVEDMLNAARSTSGVEDHAYAKLLTEDLERARRQINDEYAALQRRYGSEQELLAHFNQVIQTIRKQRYYTVKSTALGE

Flanking regions ( +/- flanking 50bp)

AACCCTGAGTTTCTTGTTCGCTATCTGCGTGCACAAGGAGGGTTATAACGATGAAAAAAGTATTCCGAGTATCGCTTATCGCCTGTGCGATTGGTTTTTCATCTATGAGCCAAGCAAGCTTGCAACAGGAGATGAATCAGTTGTTTGGTTCAATGACCAACACCACTGCGCCTGGTGTATTCGAGAGTCAGCGGCGTGGCGTTATATCTGGTGGAAGCGTTGTTGTCCGTAACAGGATCATGAACGAAAACCTCGTCTCAATGGTGCCTCCTTCATTCCAAGCAGGTTGTGGCGGCATTGATATGTTCGCTGGAAGTTTGTCATTTGTTAATGCAGATCAGTTTGTTCAATTACTTCGCTCTGTAGCGGCAAATGCCAAGGGATACGCATTCCAATTAGCGCTCAGTGCTATGTGTGAGAAATGCTCTCAGCACATGGAGACACTGCAAAAGAAAATACAGCAGTTGAACGAGTATTTTGGCAATTCCTGTCAAATGGCTCAGGGAGTCGTGAACGATACCCTGGCTGCTTTTGGTAAAAAGGGGCAAACAGAAGCCAGCATGTTGAGCTCACTTAAAGGGGCTGGAGACATTTTTACCAGTTGGAGTGAGTCCAATGGTAAGAACCCTTATGAGAACGCTTCAAGTGTCGCGGCATCGGATGTGAACAAAACAATTAAAGGTAACTTGGTCTGGCGAGCACTGAAACGTCACTCGGCATCAAGCTGGTTTGCATCGGGGGATGATCGTTTTCTTGAAGCGGTTATGTCGGTGACTGGTTCGATCATCGTTGGTGATTTAGCGAATGCCGCTGATGGCCAAGGTAAAGCCCCAAAACTGACCAGACTAAATGGCAATAAAGTGACTATTGAGCATCTAATTCATGGCGGTAACGTCGCTATGTACCGATGTGACACAGTGACGCAAGACGGTTGTCTGAACCCAACAATCACTAACGTGACTCTTACCGGGTTATCAACTCAGGTAGAAAATTTACTTCTTGGTACAGGTTCTAGTAACGGCATTATTTTTAAGTTTGCTCGAAATACAGGGGCTGCTAGCACCACCGAAAAGGCTTTTATGACCTCGGCTCCTGCGAGTATTGGCGGCATGATTCGAACACTTTCTGCATTAAATGAAGGGGCCGCTAGGTCGTTTGCTTCACGAGCGGCACCATTTATTGCTGTTGAGATGGCCCGGGCATTGGTTGAAGACATGCTCAATGCAGCTAGAAGCACATCGGGTGTGGAAGATCATGCCTATGCGAAGTTGTTAACCGAAGACCTTGAACGTGCACGTCGCCAAATCAATGATGAGTACGCTGCGTTGCAGCGAAGATACGGCTCAGAGCAAGAATTGCTGGCGCATTTTAACCAGGTGATTCAGACCATTCGCAAACAGCGTTATTACACCGTTAAATCTACGGCGCTGGGGGAATAGGTCATGTGGGAAATCTATTCCATCGGGGATTCGGCTTTTTTAGAGCAGGT