Homologs in group_4548

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4548

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4548

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0DV94 5.64e-20 91 28 8 283 1 ret Retron Vc95 reverse transcriptase Vibrio cholerae serotype O1 biovar El Tor
P23070 1.44e-19 90 28 9 278 1 ret Retron Ec86 reverse transcriptase Escherichia coli
Q46666 1.95e-18 87 28 4 254 1 ret Retron Ec78 reverse transcriptase Escherichia coli
Q47526 1.05e-17 85 29 5 252 1 ret Retron Ec83 reverse transcriptase Escherichia coli
P23071 3.2e-14 76 20 6 271 3 None Retron Mx65 reverse transcriptase Myxococcus xanthus
P23072 3.45e-13 73 19 5 270 3 None Retron Mx162 reverse transcriptase Myxococcus xanthus
P0DV86 3.38e-12 69 27 13 286 1 ret Retron Ec73 reverse transcriptase Escherichia coli
P0DV59 3.64e-11 67 26 6 212 1 ret Retron Eco8 reverse transcriptase Escherichia coli
P21325 2.53e-07 55 22 6 215 1 ret Retron Ec67 protein Escherichia coli
P71276 6.09e-06 51 24 8 217 1 ret Retron Ec48 reverse transcriptase Escherichia coli
P0DV89 0.000126 47 25 4 189 1 ret Retron Se72 reverse transcriptase Salmonella heidelberg (strain 579083-10)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS11655
Feature type CDS
Gene -
Product reverse transcriptase domain-containing protein
Location 2574920 - 2575873 (strand: -1)
Length 954 (nucleotides) / 317 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4548
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF00078 Reverse transcriptase (RNA-dependent DNA polymerase)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K00986 RNA-directed DNA polymerase [EC:2.7.7.49] - -

Protein Sequence

MKLEEVFNFYFNGKESFEQFYTLSLNDHIKEFNFNNKKCYSISDELKTIQLFLSKFIFENIEFRKDLVYSYRKGVNVVDCISPHRFNNYIYKTDIENFFPSIGYDLIKNKIIEKVKDISFLDTNDVMVHLSRILELVTIDKKLPIGFSSSPAISNFVMYDIDCKIDCFAKNNDLIYTRYADDIILSGKNNLDKNSINQEINNILNYNQDNVFHLNDKKTKIITKKFERNILGISISPVGTLSISRQLKKEIEVKIFFLINNKDKFVKFSEMDEMSAIFSLAGKLSYALGVDPVYINKLRRKYGNSIINKLIKNKGDL

Flanking regions ( +/- flanking 50bp)

AAGGGTGAAGAGAGATTCTTCACCCTTTCTAATATATAGGGGGAAAGAATATGAAATTAGAGGAAGTCTTTAATTTTTATTTTAATGGAAAAGAGAGTTTCGAACAATTTTATACATTATCTTTAAATGATCATATTAAAGAATTTAATTTTAATAATAAAAAATGTTATTCAATCAGTGATGAATTAAAAACAATTCAACTATTTTTATCTAAATTTATTTTTGAAAATATAGAGTTTAGAAAAGATTTAGTTTACTCTTATCGAAAAGGAGTTAATGTAGTAGATTGTATTTCTCCTCATAGGTTTAATAATTATATATATAAAACAGATATTGAAAATTTTTTTCCATCTATAGGCTATGACTTAATAAAAAATAAAATAATAGAAAAAGTAAAAGATATTTCTTTTTTAGATACAAATGATGTAATGGTTCATTTATCTAGAATATTAGAGTTAGTTACTATAGATAAAAAACTACCTATAGGTTTTTCGTCATCACCAGCTATAAGTAATTTTGTTATGTATGATATTGATTGTAAAATAGATTGTTTTGCTAAAAATAACGATTTAATATATACAAGATATGCGGATGATATTATTTTATCAGGTAAAAATAACTTAGATAAGAATTCAATTAACCAAGAGATTAATAATATATTGAATTATAATCAGGATAATGTATTTCATTTAAATGATAAAAAAACAAAAATAATAACAAAAAAATTTGAAAGGAATATATTAGGTATAAGCATTTCTCCTGTAGGAACTCTTTCGATAAGTCGTCAGTTAAAAAAAGAGATAGAAGTTAAAATATTTTTTCTTATTAATAATAAAGATAAATTTGTCAAGTTTTCAGAAATGGATGAAATGAGTGCAATATTTTCTTTAGCTGGAAAATTATCTTATGCATTAGGTGTTGATCCAGTTTATATAAATAAGCTAAGACGTAAATATGGTAATTCAATAATTAATAAATTAATTAAAAATAAAGGTGATTTGTGATGTTTATATCACTAAACATTAAATCATTACAACACATTAATAATGTTTTA