Homologs in group_1110

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06325 FBDBKF_06325 69.9 Morganella morganii S1 nudF ADP-ribose diphosphatase
EHELCC_09370 EHELCC_09370 69.9 Morganella morganii S2 nudF ADP-ribose diphosphatase
NLDBIP_09750 NLDBIP_09750 69.9 Morganella morganii S4 nudF ADP-ribose diphosphatase
LHKJJB_08005 LHKJJB_08005 69.9 Morganella morganii S3 nudF ADP-ribose diphosphatase
HKOGLL_07555 HKOGLL_07555 69.9 Morganella morganii S5 nudF ADP-ribose diphosphatase
F4V73_RS15595 F4V73_RS15595 68.9 Morganella psychrotolerans nudF ADP-ribose diphosphatase

Distribution of the homologs in the orthogroup group_1110

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1110

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P83844 6.43e-111 318 71 0 208 3 nudF ADP-ribose pyrophosphatase Shigella flexneri
Q93K97 6.43e-111 318 71 0 208 1 nudF ADP-ribose pyrophosphatase Escherichia coli (strain K12)
P83842 6.43e-111 318 71 0 208 3 nudF ADP-ribose pyrophosphatase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P83843 6.43e-111 318 71 0 208 3 nudF ADP-ribose pyrophosphatase Escherichia coli O157:H7
P44684 4.28e-75 228 53 1 201 1 nudF ADP-ribose pyrophosphatase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A8GHJ1 4.1e-26 102 30 4 188 3 nudK GDP-mannose pyrophosphatase Serratia proteamaculans (strain 568)
A4WD46 7.16e-25 99 32 5 186 3 nudK GDP-mannose pyrophosphatase Enterobacter sp. (strain 638)
Q6D8X4 8.36e-25 99 31 4 181 3 nudK GDP-mannose pyrophosphatase Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
Q83K58 9.11e-24 96 30 4 188 3 nudK GDP-mannose pyrophosphatase Shigella flexneri
Q0T250 9.11e-24 96 30 4 188 3 nudK GDP-mannose pyrophosphatase Shigella flexneri serotype 5b (strain 8401)
Q32DA4 1.41e-23 95 30 4 188 3 nudK GDP-mannose pyrophosphatase Shigella dysenteriae serotype 1 (strain Sd197)
Q8XBE7 1.41e-23 95 30 4 188 3 nudK GDP-mannose pyrophosphatase Escherichia coli O157:H7
Q1R8R1 1.65e-23 95 29 4 188 3 nudK GDP-mannose pyrophosphatase Escherichia coli (strain UTI89 / UPEC)
Q8FF87 1.65e-23 95 29 4 188 3 nudK GDP-mannose pyrophosphatase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TF11 1.65e-23 95 29 4 188 3 nudK GDP-mannose pyrophosphatase Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1ADX2 1.65e-23 95 29 4 188 3 nudK GDP-mannose pyrophosphatase Escherichia coli O1:K1 / APEC
A7ML00 2.07e-23 95 31 4 189 3 nudK GDP-mannose pyrophosphatase Cronobacter sakazakii (strain ATCC BAA-894)
B1LNB6 3.19e-23 95 30 4 188 3 nudK GDP-mannose pyrophosphatase Escherichia coli (strain SMS-3-5 / SECEC)
Q3YZ86 4.03e-23 94 30 4 188 3 nudK GDP-mannose pyrophosphatase Shigella sonnei (strain Ss046)
Q31Y24 4.03e-23 94 30 4 188 3 nudK GDP-mannose pyrophosphatase Shigella boydii serotype 4 (strain Sb227)
A7ZPR0 4.03e-23 94 30 4 188 3 nudK GDP-mannose pyrophosphatase Escherichia coli O139:H28 (strain E24377A / ETEC)
P37128 7.71e-23 94 30 4 188 1 nudK GDP-mannose pyrophosphatase Escherichia coli (strain K12)
B1IWJ3 7.71e-23 94 30 4 188 3 nudK GDP-mannose pyrophosphatase Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A2V7 7.71e-23 94 30 4 188 3 nudK GDP-mannose pyrophosphatase Escherichia coli O9:H4 (strain HS)
B1XAD8 7.71e-23 94 30 4 188 3 nudK GDP-mannose pyrophosphatase Escherichia coli (strain K12 / DH10B)
Q7CQ25 8.29e-22 91 30 5 190 3 nudK GDP-mannose pyrophosphatase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8XG64 8.29e-22 91 30 5 190 3 nudK GDP-mannose pyrophosphatase Salmonella typhi
A9N308 2.15e-21 90 30 5 190 3 nudK GDP-mannose pyrophosphatase Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PCQ1 2.15e-21 90 30 5 190 3 nudK GDP-mannose pyrophosphatase Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q57LN3 2.15e-21 90 30 5 190 3 nudK GDP-mannose pyrophosphatase Salmonella choleraesuis (strain SC-B67)
B1JSJ3 5.86e-21 89 31 4 186 3 nudK GDP-mannose pyrophosphatase Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q668I3 5.86e-21 89 31 4 186 3 nudK GDP-mannose pyrophosphatase Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TMK5 5.86e-21 89 31 4 186 3 nudK GDP-mannose pyrophosphatase Yersinia pestis (strain Pestoides F)
Q1CK00 5.86e-21 89 31 4 186 3 nudK GDP-mannose pyrophosphatase Yersinia pestis bv. Antiqua (strain Nepal516)
Q74SF4 5.86e-21 89 31 4 186 3 nudK GDP-mannose pyrophosphatase Yersinia pestis
A7FG78 5.86e-21 89 31 4 186 3 nudK GDP-mannose pyrophosphatase Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A9MHR4 9.85e-21 88 29 6 192 3 nudK GDP-mannose pyrophosphatase Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
A6TC90 3.41e-20 87 34 4 151 3 nudK GDP-mannose pyrophosphatase Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
A8ADC6 4.8e-20 86 29 4 184 3 nudK GDP-mannose pyrophosphatase Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
A1JL31 6.45e-20 86 30 4 186 3 nudK GDP-mannose pyrophosphatase Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q8KP10 6.19e-11 62 29 4 153 1 act Methanol dehydrogenase activator Bacillus methanolicus
P54570 4.66e-10 59 30 5 153 1 nudF ADP-ribose pyrophosphatase Bacillus subtilis (strain 168)
Q9RVK2 0.000198 43 28 4 128 1 DR_1025 Nudix hydrolase DR_1025 Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS11615
Feature type CDS
Gene nudF
Product ADP-ribose diphosphatase
Location 2566530 - 2567159 (strand: -1)
Length 630 (nucleotides) / 209 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1110
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00293 NUDIX domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0494 Defense mechanisms (V) V 8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01515 ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] Purine metabolism
Riboflavin metabolism
Metabolic pathways		 -

Protein Sequence

MNKKENTPFLYTRNDVELISKKTLYKGFFRMNEYRFKHRLFKGGWSAEVKREVFERGHAGVLLAYDPKRDEVVLIEQIRIPAYETSQTPWLLEVIAGMVEEGESPEEVVRREATEEAGITIGRCKPIVSYLSSPGGTSERMYVYVGEVDATTATGIHGLACENEDIRVHVVSREQAYQWVEEGIIDNAASVIALQWLQLHHVTLRKDWL

Flanking regions ( +/- flanking 50bp)

TTAAACGTATGCAATAAAAAAAGACTTAAGTATAACCAGAGGAATATTGTATGAACAAAAAGGAAAATACACCATTTTTATATACACGTAATGATGTTGAGCTGATAAGTAAAAAAACACTCTATAAAGGCTTTTTCCGTATGAACGAGTATCGTTTCAAACACCGTTTATTTAAGGGAGGATGGAGTGCCGAAGTTAAGCGAGAAGTGTTCGAACGTGGTCATGCGGGTGTTTTATTGGCTTATGATCCTAAACGAGACGAAGTTGTATTAATCGAACAAATTCGTATTCCAGCTTATGAAACCAGTCAAACACCTTGGTTATTAGAAGTGATTGCCGGCATGGTGGAAGAAGGAGAAAGCCCTGAAGAGGTGGTAAGACGGGAAGCCACAGAAGAAGCGGGGATCACAATAGGTCGTTGTAAGCCCATTGTAAGTTACCTTTCAAGCCCCGGAGGAACCAGTGAGCGGATGTATGTCTATGTAGGGGAAGTGGATGCCACAACAGCAACAGGCATACATGGGCTAGCTTGTGAAAATGAAGATATTCGTGTTCATGTCGTCAGCCGAGAGCAGGCTTATCAATGGGTTGAAGAAGGGATAATTGATAATGCCGCTTCCGTCATCGCACTTCAGTGGTTACAGCTTCATCATGTCACCTTAAGAAAAGATTGGTTGTGATAATTGCCAAAAGAAACTTTATTCGTCACTATGAAAAGATATGATAAATG