Homologs in group_4546

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4546

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4546

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
L0TGF0 4.35e-08 53 38 1 93 1 vapC50 Putative ribonuclease VapC50 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS11505
Feature type CDS
Gene -
Product PIN domain-containing protein
Location 2534186 - 2534755 (strand: 1)
Length 570 (nucleotides) / 189 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4546
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF13470 PIN domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1569 General function prediction only (R) R Predicted nucleic acid-binding protein, contains PIN domain

Protein Sequence

MTNYTVLLDACVMYPAPLRSYLMYLANTGLFRARWSNQIHDEWITNLLVNNPTLTAERLIRTRDLMNAHVPDCLVEGYEPLICGLKLPDPNDRHVLAAAIKGQAQAIITFNLKDFPQKYLNSFDISAIHPDEFLSDMFELNPSSCIKAAQQHRQSLKNPPMTVETFLGCLQKQKLPQFISHLRAFQILL

Flanking regions ( +/- flanking 50bp)

GCCCTTGCTGAATTATCGCAATTAGATCAAGAAATGGATATGGGGTATTAATGACAAACTATACTGTTTTGCTTGATGCCTGTGTCATGTATCCAGCCCCTCTTAGAAGTTATTTAATGTATCTTGCTAATACTGGTTTATTTAGAGCACGTTGGAGTAATCAGATCCATGATGAATGGATCACTAATTTATTAGTCAACAATCCAACATTAACAGCTGAGCGACTAATACGAACCAGAGATTTAATGAATGCACATGTTCCTGATTGTTTAGTAGAAGGCTACGAACCGCTTATTTGTGGTTTAAAGCTACCTGATCCTAATGATCGTCATGTGCTAGCAGCAGCAATAAAAGGGCAGGCTCAAGCTATAATTACATTTAACTTAAAAGATTTTCCGCAAAAATACCTTAATTCTTTTGATATTTCAGCTATCCATCCTGATGAATTTTTGAGTGACATGTTTGAATTAAATCCTAGTAGCTGTATTAAAGCGGCGCAACAACATAGACAAAGCCTAAAGAATCCACCAATGACCGTAGAGACCTTTTTAGGCTGTTTACAAAAGCAGAAATTACCCCAGTTTATTTCCCATTTACGGGCATTCCAGATATTATTATAAGTACATCAACCCGTGTAATATCCCATTTCCTATCATAACAAGGCTATGAT