Homologs in group_4531

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4531

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4531

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
L7P9J4 4.14e-77 244 38 6 359 1 IL45_01505 Unsaturated 3S-rhamnoglycuronyl hydrolase Nonlabens ulvanivorans
T2KPL9 3.47e-69 224 35 5 362 2 BN863_22220 Unsaturated 3S-rhamnoglycuronyl hydrolase Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1)
P9WF04 4.02e-61 204 38 3 280 1 LOR_28 Unsaturated 3S-rhamnoglycuronyl hydrolase Alteromonas sp. (strain LOR)
O34559 4.85e-13 73 26 15 331 1 yteR Unsaturated rhamnogalacturonyl hydrolase YteR Bacillus subtilis (strain 168)
O31521 3.01e-05 48 22 14 361 1 yesR Unsaturated rhamnogalacturonyl hydrolase YesR Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10500
Feature type CDS
Gene -
Product glycoside hydrolase family 88 protein
Location 2310927 - 2311997 (strand: -1)
Length 1071 (nucleotides) / 356 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4531
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF07470 Glycosyl Hydrolase Family 88

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4225 Carbohydrate transport and metabolism (G) G Rhamnogalacturonyl hydrolase YesR

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K15532 unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172] - -

Protein Sequence

MEHANTEALQRDLVLQNMKRVYRYQSAHQVRSVRRRSGKTRFIKDTDWERGVLWTCVSAAWQATQDKEYLNGVLNYTLHTGFRTGPNARFADDHVCAQAYLAISPLFEQSEILEPTIKAFDIMLNDPKPGREDWWWCDALFMAPPGFAALAEIISERRYLDYMHTAYWDAIEHLRDAETGLIFRDHRYIPDGQGNEMREANGEKVFWSRGIGWVLASIPRILQYMPDDYHERDRYITLFKQLARSILDYQHEDGFWRTSLLDPDNFPAPESSATALFCYGLAWGINQGELNKEEYFPALHRAWSALQSCIHDNGMIGWVQLPAFNPREVKFEHNMDYGAGAYLLAGSEVLKMTLNN

Flanking regions ( +/- flanking 50bp)

ATTGCGGTTGATGGTGGTTGGTTAGCTCGATAATCTTATGGAGAACTAGGATGGAACACGCTAATACAGAGGCTTTACAAAGAGATCTCGTGTTACAAAATATGAAACGGGTTTATCGTTATCAATCTGCTCATCAAGTTCGTAGTGTTCGTCGCCGTAGTGGTAAAACTCGTTTTATTAAAGATACAGATTGGGAACGCGGTGTTTTATGGACCTGTGTAAGTGCGGCATGGCAAGCGACACAAGATAAAGAGTACCTTAATGGTGTGTTAAATTACACCTTACATACTGGATTTAGAACAGGTCCTAATGCACGTTTTGCGGATGATCATGTTTGCGCTCAAGCTTATTTGGCGATAAGTCCTTTGTTTGAACAATCTGAAATTCTTGAACCGACGATTAAAGCGTTTGATATCATGCTAAATGATCCAAAACCAGGGCGTGAAGACTGGTGGTGGTGCGATGCTCTTTTTATGGCACCTCCTGGTTTTGCTGCTTTGGCTGAAATTATTAGCGAACGACGTTATTTGGATTATATGCATACCGCTTATTGGGATGCTATTGAACATTTACGTGATGCTGAAACTGGACTTATTTTCCGCGATCACCGCTATATTCCTGATGGTCAGGGAAATGAAATGCGTGAAGCTAATGGTGAAAAAGTATTTTGGAGTCGCGGTATTGGTTGGGTTTTGGCTTCTATTCCTCGCATTCTTCAATATATGCCTGATGATTATCATGAGCGCGATCGTTATATAACACTGTTTAAACAATTAGCGCGTTCTATCCTAGATTACCAACATGAAGATGGTTTTTGGCGCACCAGTTTATTAGATCCTGATAATTTCCCTGCACCTGAAAGTTCAGCTACGGCGCTTTTTTGTTATGGACTTGCATGGGGAATAAATCAGGGTGAATTAAATAAAGAAGAATATTTTCCCGCATTACATAGAGCGTGGTCAGCATTACAATCCTGTATTCATGATAATGGCATGATTGGTTGGGTACAACTTCCGGCATTTAATCCGCGAGAGGTAAAGTTTGAGCATAATATGGATTATGGCGCTGGAGCATACTTATTAGCGGGTAGTGAAGTATTAAAAATGACGTTAAATAATTAGCTCTTTATATTAATAATTGGTAATTTAATACCTATTCCTTTTAATTTGTT