Homologs in group_4481

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4481

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4481

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P65292 1.13e-12 60 44 2 75 3 ygdI Uncharacterized lipoprotein YgdI Escherichia coli (strain K12)
P65293 1.13e-12 60 44 2 75 3 ygdI Uncharacterized lipoprotein YgdI Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P65297 5.96e-10 53 38 2 73 3 ygdR Uncharacterized lipoprotein YgdR Shigella flexneri
P65294 5.96e-10 53 38 2 73 1 ygdR Uncharacterized lipoprotein YgdR Escherichia coli (strain K12)
P65295 5.96e-10 53 38 2 73 3 ygdR Uncharacterized lipoprotein YgdR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P65296 5.96e-10 53 38 2 73 3 ygdR Uncharacterized lipoprotein YgdR Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS08525
Feature type CDS
Gene -
Product YgdI/YgdR family lipoprotein
Location 1859409 - 1859642 (strand: 1)
Length 234 (nucleotides) / 77 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4481
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF06004 Bacterial protein of unknown function (DUF903)

Protein Sequence

MKLKTILPICAASFSLLLLAGCSSPQKIETVDGQTILTTDKPQEDESTGLIIYKDAETGAIKQINRDQIRRMVELDD

Flanking regions ( +/- flanking 50bp)

CGTATTTTTAACTAAAGTTAAATAACAGAGTTATAAAAAGGATCGTTACTATGAAACTAAAAACTATTTTACCGATTTGTGCCGCCTCTTTCTCTTTACTGCTATTAGCAGGTTGTTCATCGCCACAAAAAATTGAAACCGTCGATGGGCAAACTATTTTGACCACAGATAAACCTCAAGAAGATGAGTCTACCGGATTAATTATTTATAAAGATGCTGAAACCGGTGCAATCAAACAAATTAATCGTGATCAAATAAGAAGAATGGTTGAGCTTGATGATTAATTAATCTTTTTTTGTCATTCAACAACCAAAGACATGTTAAATAGCGCCAA