Homologs in group_1789

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13180 FBDBKF_13180 35.2 Morganella morganii S1 - Antitermination protein
EHELCC_08915 EHELCC_08915 35.2 Morganella morganii S2 - Antitermination protein
NLDBIP_09240 NLDBIP_09240 35.2 Morganella morganii S4 - Antitermination protein
LHKJJB_05025 LHKJJB_05025 35.2 Morganella morganii S3 - Antitermination protein
HKOGLL_05890 HKOGLL_05890 35.2 Morganella morganii S5 - Antitermination protein
F4V73_RS02035 F4V73_RS02035 36.0 Morganella psychrotolerans - antitermination protein

Distribution of the homologs in the orthogroup group_1789

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1789

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76161 3.27e-39 140 33 6 272 3 quuQ Prophage antitermination protein Q homolog QuuQ Escherichia coli (strain K12)
P57020 2.03e-24 100 28 5 273 3 23 Antitermination protein Q Salmonella phage P22
P03047 1.07e-21 93 39 2 138 1 Q Antitermination protein Q Escherichia phage lambda
Q02582 2.62e-21 92 39 2 138 3 Q Antitermination protein Q Escherichia phage HK022
O80286 1.31e-20 90 27 7 271 3 23 Antitermination protein Q Bacteriophage PS34

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS08450
Feature type CDS
Gene -
Product antitermination protein
Location 1840978 - 1841793 (strand: -1)
Length 816 (nucleotides) / 271 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1789
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF03589 Antitermination protein

Protein Sequence

MRLADLPKYFSPKSVVLSDVRTPKAVDSLSITDVMASISLATRKGRMGIELFLAKHHINRPEEAIESLYQCALTQVNQYKMIDKLAEHDKAKVLHIIAEYAFQDYARSAASKRACPDCDDGFIEVEVFTTKCHGRKTTRQVTQNAKPHLKTTSSNKPSFREVREVTRVICPTCKGKAEIRLACRCHGRGKIIDKKQTELQGVAVFKPCRQCAGRGYPRLKFSEVLQQLQHVVSISKTAAYSHYKPLFDFLVAECFKEESLSDKFLQEVTIK

Flanking regions ( +/- flanking 50bp)

GGATATGGATAAGCAAATAAGTCGTGACAGTAAATCAAAGGGAATATTGTATGAGATTAGCTGACTTACCTAAGTATTTTTCTCCAAAAAGTGTTGTATTAAGTGATGTTAGAACGCCTAAAGCTGTTGATTCATTATCCATTACGGATGTAATGGCTTCAATAAGCTTAGCGACACGTAAAGGGCGAATGGGAATAGAGCTATTTTTAGCGAAACACCACATTAACCGTCCCGAAGAAGCGATAGAAAGCCTGTATCAATGTGCATTAACTCAAGTTAACCAATATAAGATGATTGATAAGTTAGCTGAACATGATAAAGCTAAAGTTTTACATATTATCGCTGAATATGCTTTTCAGGATTATGCCAGAAGTGCAGCCAGCAAGAGAGCATGTCCTGATTGTGATGATGGCTTTATCGAAGTTGAAGTTTTTACCACCAAATGCCATGGTCGAAAAACAACCCGGCAGGTTACTCAAAATGCCAAACCTCATCTAAAAACAACCTCATCAAATAAACCTTCTTTTCGAGAGGTAAGGGAAGTAACACGCGTTATTTGCCCTACATGCAAAGGTAAAGCGGAAATTCGTTTAGCATGCCGTTGCCATGGACGTGGAAAAATTATTGATAAAAAACAGACTGAATTACAAGGAGTTGCCGTATTTAAACCTTGTCGCCAATGTGCTGGACGCGGTTATCCTCGCCTTAAATTCAGCGAAGTCTTACAACAATTGCAACATGTGGTGAGTATTTCAAAAACGGCTGCTTATAGTCATTATAAACCGCTATTTGATTTTTTAGTGGCGGAATGCTTTAAAGAAGAGTCTTTATCAGATAAATTTCTACAAGAAGTTACTATAAAATAATAATTTTCTATTTTTATTTATTTTTATGAAAAAATATTGTTGACTTAAAG