Homologs in group_974

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05385 FBDBKF_05385 55.4 Morganella morganii S1 abgR HTH-type transcriptional regulator AbgR
EHELCC_12205 EHELCC_12205 55.4 Morganella morganii S2 abgR HTH-type transcriptional regulator AbgR
NLDBIP_12545 NLDBIP_12545 55.4 Morganella morganii S4 abgR HTH-type transcriptional regulator AbgR
LHKJJB_12405 LHKJJB_12405 55.4 Morganella morganii S3 abgR HTH-type transcriptional regulator AbgR
HKOGLL_11020 HKOGLL_11020 55.4 Morganella morganii S5 abgR HTH-type transcriptional regulator AbgR
F4V73_RS05840 F4V73_RS05840 56.4 Morganella psychrotolerans - LysR family transcriptional regulator

Distribution of the homologs in the orthogroup group_974

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_974

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0DV33 2.03e-06 52 39 0 69 1 admX HTH-type transcriptional regulator AdmX Serratia plymuthica
Q05840 2.34e-06 51 36 1 77 3 clcR HTH-type transcriptional regulator ClcR Pseudomonas putida
P03030 3.06e-06 51 34 0 66 3 lysR Transcriptional activator protein LysR Escherichia coli (strain K12)
P77171 3.76e-06 51 37 0 58 3 ydcI Uncharacterized HTH-type transcriptional regulator YdcI Escherichia coli (strain K12)
P42427 9.35e-06 49 22 1 144 3 tfdT HTH-type transcriptional regulator TfdT Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
P77744 9.82e-06 49 36 1 71 3 abgR HTH-type transcriptional regulator AbgR Escherichia coli (strain K12)
P52044 1.32e-05 49 32 1 87 3 ygfI Uncharacterized HTH-type transcriptional regulator YgfI Escherichia coli (strain K12)
P27111 2.27e-05 48 33 1 81 1 cynR HTH-type transcriptional regulator CynR Escherichia coli (strain K12)
Q8X4M5 2.31e-05 48 33 1 81 3 cynR HTH-type transcriptional regulator CynR Escherichia coli O157:H7
Q04778 4.04e-05 47 38 0 71 3 alsR HTH-type transcriptional regulator AlsR Bacillus subtilis (strain 168)
P30864 4.41e-05 47 36 1 73 3 yafC Uncharacterized HTH-type transcriptional regulator YafC Escherichia coli (strain K12)
Q46M57 6.05e-05 47 35 0 68 1 tfdR HTH-type transcriptional regulator TdfR Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
Q46M54 6.57e-05 47 35 0 68 1 tfdS HTH-type transcriptional regulator TfdS Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
P52665 8.91e-05 45 34 0 64 3 budR HTH-type transcriptional regulator BudR (Fragment) Klebsiella aerogenes
Q00678 0.00012 46 34 0 70 3 nocR Regulatory protein NocR Agrobacterium fabrum (strain C58 / ATCC 33970)
A0R8S0 0.000122 46 43 0 58 3 czcR HTH-type transcriptional regulator CzcR Bacillus thuringiensis (strain Al Hakam)
Q6HPH4 0.000135 46 43 0 58 3 czcR HTH-type transcriptional regulator CzcR Bacillus thuringiensis subsp. konkukian (strain 97-27)
Q81VJ1 0.000135 46 43 0 58 3 czcR HTH-type transcriptional regulator CzcR Bacillus anthracis
Q63H01 0.000136 46 43 0 58 3 czcR HTH-type transcriptional regulator CzcR Bacillus cereus (strain ZK / E33L)
Q73EY2 0.000136 46 43 0 58 3 czcR HTH-type transcriptional regulator CzcR Bacillus cereus (strain ATCC 10987 / NRS 248)
Q81IX0 0.000191 45 43 0 58 3 czcR HTH-type transcriptional regulator CzcR Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P0A9F6 0.00026 45 34 0 76 1 gcvA Glycine cleavage system transcriptional activator Escherichia coli (strain K12)
P0A9F7 0.00026 45 34 0 76 3 gcvA Glycine cleavage system transcriptional activator Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9F8 0.00026 45 34 0 76 3 gcvA Glycine cleavage system transcriptional activator Escherichia coli O157:H7
O35038 0.000303 45 30 2 94 3 ytlI HTH-type transcriptional regulator YtlI Bacillus subtilis (strain 168)
Q9I6Z9 0.000361 45 31 2 102 3 bauR HTH-type transcriptional activator BauR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P35112 0.000454 44 32 0 70 3 nocR Regulatory protein NocR Agrobacterium tumefaciens (strain T37)
P13041 0.000652 44 33 0 71 1 mkaC Virulence genes transcriptional activator Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A4T3 0.000654 44 34 0 70 1 occR Octopine catabolism/uptake operon regulatory protein OccR Rhizobium radiobacter
P0A4T4 0.000654 44 34 0 70 1 occR Octopine catabolism/uptake operon regulatory protein OccR Agrobacterium tumefaciens (strain Ach5)
P42722 0.000727 44 36 0 58 3 cfxR HTH-type transcriptional regulator CfxR Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q47005 0.000744 43 30 0 71 3 nac Nitrogen assimilation regulatory protein nac Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS07240
Feature type CDS
Gene -
Product LysR family transcriptional regulator
Location 1584579 - 1585442 (strand: -1)
Length 864 (nucleotides) / 287 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_974
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00126 Bacterial regulatory helix-turn-helix protein, lysR family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0583 Transcription (K) K DNA-binding transcriptional regulator, LysR family

Protein Sequence

MFFSRKLEAFMAVVENGSLSKAARVMNRTTPPVAKSIKDFEAVLGKRLFKREKFGMSLTQEGLELYNDLKSLYLQEKEITKKHTSGIINNSIHVYYDWGKSQYLTALYQAANKNCSHINMMRFSKDNFEEIPDYDGNTLILSSDKIISEKFSLIHQVKNKYLGICCQQILAQKAQENINTLLKENIWLCDPALYKTAKIKKLENEIADQGKPVSIRLMDDLNCCLNFIQTHHSLLFTDENPIKSEDEKQLCFIPLTQTELIYNCYIYKSKYHSSILNRFVDLIKELE

Flanking regions ( +/- flanking 50bp)

ATAAAATTAATTTAATTGTTTTGTTTAACACAGCAAAGGAATGGTGGATTATGTTTTTTTCTCGTAAATTAGAGGCCTTTATGGCCGTCGTTGAAAATGGATCCTTAAGTAAAGCTGCTCGTGTGATGAACCGAACGACACCACCTGTAGCGAAATCAATCAAAGATTTTGAAGCCGTGCTAGGGAAGCGCTTGTTTAAGCGGGAAAAGTTTGGTATGAGTTTAACGCAAGAAGGGTTAGAACTCTATAATGATTTAAAATCACTTTATCTGCAAGAAAAAGAGATAACAAAAAAACACACATCGGGCATTATTAATAATAGCATTCATGTTTATTATGATTGGGGTAAAAGTCAATATTTAACAGCACTCTATCAAGCAGCCAATAAGAATTGTTCACATATAAATATGATGAGATTTTCGAAAGATAATTTTGAAGAGATACCAGATTATGATGGAAACACGTTAATCTTAAGCTCAGATAAAATTATTAGTGAAAAGTTTAGCTTAATACATCAAGTTAAAAATAAATATCTAGGAATATGTTGCCAACAAATCTTAGCACAAAAAGCACAAGAGAATATCAATACATTGCTAAAAGAAAATATTTGGTTATGTGATCCCGCTTTATATAAAACAGCAAAAATAAAGAAATTAGAAAATGAAATAGCGGATCAGGGTAAACCTGTCAGTATTAGATTGATGGATGATTTAAATTGTTGTTTAAACTTTATTCAAACTCACCATTCGCTATTATTTACTGATGAAAACCCGATTAAAAGTGAGGATGAAAAGCAACTGTGCTTTATACCTTTAACACAAACGGAGCTGATTTATAATTGTTATATCTATAAATCTAAATATCACTCGAGTATATTGAACAGGTTTGTTGATTTAATAAAAGAATTGGAATGAAAAAATAGTGAAGAGTATTGAAGATGGTGGTGGGAGAAGGATTCGAACCT