Homologs in group_219

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8 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20005 FBDBKF_20005 31.6 Morganella morganii S1 - HTH cro/C1-type domain-containing protein
EHELCC_03525 EHELCC_03525 31.6 Morganella morganii S2 - HTH cro/C1-type domain-containing protein
NLDBIP_03525 NLDBIP_03525 31.6 Morganella morganii S4 - HTH cro/C1-type domain-containing protein
LHKJJB_09355 LHKJJB_09355 31.6 Morganella morganii S3 - HTH cro/C1-type domain-containing protein
HKOGLL_09620 HKOGLL_09620 31.6 Morganella morganii S5 - HTH cro/C1-type domain-containing protein
PMI_RS05155 PMI_RS05155 34.5 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator
PMI_RS10960 PMI_RS10960 41.2 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator
PMI_RS14845 PMI_RS14845 38.6 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of the homologs in the orthogroup group_219

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_219

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9ZD50 7.09e-05 42 31 0 61 4 RP497 Uncharacterized HTH-type transcriptional regulator RP497 Rickettsia prowazekii (strain Madrid E)
Q92HV3 8.2e-05 42 31 0 61 4 RC0668 Uncharacterized HTH-type transcriptional regulator RC0668 Rickettsia conorii (strain ATCC VR-613 / Malish 7)
P0C5S2 8.9e-05 42 36 0 61 4 R00410 Uncharacterized HTH-type transcriptional regulator R00410 Rhizobium meliloti (strain 1021)
A6U5H5 8.9e-05 42 36 0 61 4 Smed_0045 Uncharacterized HTH-type transcriptional regulator Smed_0045 Sinorhizobium medicae (strain WSM419)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS07115
Feature type CDS
Gene -
Product helix-turn-helix transcriptional regulator
Location 1553584 - 1553919 (strand: -1)
Length 336 (nucleotides) / 111 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_219
Orthogroup size 9
N. genomes 6

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Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Protein Sequence

MEINNFSLNFEYISERKIFCHSIGYELFLLRQRNSMTGAELGKLLNISQQQISRYERGINKIPIDILFHILNIFDISISDFFEKVSKRVITLKYKIKYDSDNNIPFFENII

Flanking regions ( +/- flanking 50bp)

ATTAATCTCATAAAGTAAATTAAATGCAAATACAGTTGAGGAAGTGAATTTTGGAAATAAATAATTTCTCATTGAATTTTGAATATATTTCAGAAAGAAAAATATTTTGTCATTCGATTGGATATGAACTTTTTCTTTTAAGGCAACGTAATTCTATGACGGGGGCTGAGTTAGGAAAATTATTGAATATCTCTCAACAACAAATTTCTCGTTATGAACGAGGAATAAATAAAATACCTATTGATATACTTTTTCACATACTAAATATATTTGATATTTCAATAAGTGATTTCTTTGAAAAGGTTTCCAAAAGAGTTATCACATTAAAATATAAAATAAAATATGATTCTGATAATAATATTCCATTCTTTGAGAATATTATTTAAATGTAAGATAAATAATATTATTGGTGGCAAGTATATTAAGTATATCAATG