Homologs in group_2079

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15550 FBDBKF_15550 32.6 Morganella morganii S1 potE Serine transporter YbeC, amino acid:H+ symporter family
EHELCC_15910 EHELCC_15910 32.6 Morganella morganii S2 potE Serine transporter YbeC, amino acid:H+ symporter family
NLDBIP_16460 NLDBIP_16460 32.6 Morganella morganii S4 potE Serine transporter YbeC, amino acid:H+ symporter family
LHKJJB_16345 LHKJJB_16345 32.6 Morganella morganii S3 potE Serine transporter YbeC, amino acid:H+ symporter family
HKOGLL_16115 HKOGLL_16115 32.6 Morganella morganii S5 potE Serine transporter YbeC, amino acid:H+ symporter family
F4V73_RS17600 F4V73_RS17600 33.1 Morganella psychrotolerans - amino acid permease

Distribution of the homologs in the orthogroup group_2079

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2079

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8FHG6 0.0 773 76 2 510 3 gadC Glutamate/gamma-aminobutyrate antiporter Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P63236 0.0 772 76 2 510 3 gadC Glutamate/gamma-aminobutyrate antiporter Shigella flexneri
P63235 0.0 772 76 2 510 1 gadC Glutamate/gamma-aminobutyrate antiporter Escherichia coli (strain K12)
P58229 0.0 769 76 2 510 3 gadC Glutamate/gamma-aminobutyrate antiporter Escherichia coli O157:H7
Q9CG19 1.82e-180 519 54 4 503 3 gadC Glutamate/gamma-aminobutyrate antiporter Lactococcus lactis subsp. lactis (strain IL1403)
O30417 2.86e-179 516 54 4 503 2 gadC Glutamate/gamma-aminobutyrate antiporter Lactococcus lactis subsp. cremoris (strain MG1363)
P37034 6.58e-68 228 32 6 434 3 lpg1691 Uncharacterized transporter lpg1691 Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
P75835 2.38e-13 75 24 17 460 1 ycaM Inner membrane transporter YcaM Escherichia coli (strain K12)
Q9CEY5 3.2e-13 75 22 9 361 3 aguD Probable agmatine/putrescine antiporter AguD Lactococcus lactis subsp. lactis (strain IL1403)
P42590 3.89e-13 75 23 12 436 1 ygjI Inner membrane transporter YgjI Escherichia coli (strain K12)
P39282 9.3e-12 70 22 15 427 1 yjeM Inner membrane transporter YjeM Escherichia coli (strain K12)
P0A2N4 7.49e-11 68 22 14 424 3 yjeM Inner membrane transporter YjeM Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2N5 7.49e-11 68 22 14 424 3 yjeM Inner membrane transporter YjeM Salmonella typhi
Q84MA5 6.31e-10 65 29 3 161 1 CAT1 Cationic amino acid transporter 1 Arabidopsis thaliana
P60064 7e-10 64 24 11 339 3 adiC Arginine/agmatine antiporter Shigella flexneri
P60061 7e-10 64 24 11 339 1 adiC Arginine/agmatine antiporter Escherichia coli (strain K12)
P60062 7e-10 64 24 11 339 3 adiC Arginine/agmatine antiporter Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P60063 7e-10 64 24 11 339 1 adiC Arginine/agmatine antiporter Escherichia coli O157:H7
Q8ZGS9 2.76e-09 62 25 10 325 3 adiC Arginine/agmatine antiporter Yersinia pestis
Q6Z8D0 3.1e-09 63 24 17 394 1 PUT1 Polyamine transporter PUT1 Oryza sativa subsp. japonica
A2X8M8 3.1e-09 63 24 17 394 3 PUT1 Polyamine transporter PUT1 Oryza sativa subsp. indica
P60066 4.58e-09 62 24 9 290 1 adiC Arginine/agmatine antiporter Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P60065 4.58e-09 62 24 9 290 3 adiC Arginine/agmatine antiporter Salmonella typhi
Q9C6S5 7.37e-09 61 25 16 371 2 At1g31830 Probable polyamine transporter At1g31830 Arabidopsis thaliana
A2RL65 3.99e-08 59 26 13 322 3 acaP Aspartate/glutamate permease AcaP Lactococcus lactis subsp. cremoris (strain MG1363)
P0AAF1 2.24e-07 57 22 5 232 1 potE Putrescine transporter PotE Escherichia coli (strain K12)
P0AAF2 2.24e-07 57 22 5 232 3 potE Putrescine transporter PotE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
O07576 5.86e-07 55 30 7 205 1 bcaP Branched-chain amino acid permease BcaP Bacillus subtilis (strain 168)
O59831 2.9e-06 53 27 10 279 3 SPCC965.11c Uncharacterized amino-acid permease C965.11c Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q9SQZ0 3.01e-06 53 27 2 129 3 CAT7 Cationic amino acid transporter 7, chloroplastic Arabidopsis thaliana
P0AAE8 3.58e-06 53 21 16 423 1 cadB Cadaverine/lysine antiporter Escherichia coli (strain K12)
P0AAE9 3.58e-06 53 21 16 423 3 cadB Cadaverine/lysine antiporter Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AAF0 3.58e-06 53 21 16 423 3 cadB Cadaverine/lysine antiporter Escherichia coli O157:H7
Q9ASS7 5.81e-06 52 26 5 164 1 CAT2 Cationic amino acid transporter 2, vacuolar Arabidopsis thaliana
O32257 1.59e-05 51 25 7 209 2 yvbW Uncharacterized amino acid permease YvbW Bacillus subtilis (strain 168)
P43548 3.09e-05 50 24 6 203 1 AGP3 General amino acid permease AGP3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q9LZ20 3.82e-05 50 26 4 180 2 CAT6 Cationic amino acid transporter 6, chloroplastic Arabidopsis thaliana
Q9LH39 4.2e-05 49 21 13 367 3 At3g19553 Probable polyamine transporter At3g19553 Arabidopsis thaliana
P44768 5.48e-05 49 20 5 226 3 potE Putrescine transporter PotE Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8W4K3 7.34e-05 49 25 4 156 1 CAT4 Cationic amino acid transporter 4, vacuolar Arabidopsis thaliana
A2RHI9 0.000117 48 24 9 313 1 bcaP Branched-chain amino acid permease BcaP Lactococcus lactis subsp. cremoris (strain MG1363)
P0AAE7 0.000172 47 24 11 338 3 ydgI Putative arginine/ornithine antiporter Shigella flexneri
P0AAE5 0.000172 47 24 11 338 1 ydgI Putative arginine/ornithine antiporter Escherichia coli (strain K12)
P0AAE6 0.000172 47 24 11 338 3 ydgI Putative arginine/ornithine antiporter Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P06775 0.000206 47 28 5 166 1 HIP1 Histidine permease Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q8VIE6 0.000266 47 25 11 295 1 Slc7a12 Solute carrier family 7 member 12 Mus musculus
Q6FNY1 0.000396 47 23 8 265 3 CAN1 Arginine permease CAN1 Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138)
P53388 0.000478 46 23 7 220 1 DIP5 Dicarboxylic amino acid permease Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P38085 0.00052 46 22 2 212 1 TAT1 Valine/tyrosine/tryptophan amino-acid permease 1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q9C6S4 0.000582 46 24 14 382 3 At1g31820 Probable polyamine transporter At1g31820 Arabidopsis thaliana
Q8GYB4 0.000883 45 24 4 162 2 CAT3 Cationic amino acid transporter 3, mitochondrial Arabidopsis thaliana

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06800
Feature type CDS
Gene gadC
Product glutamate:gamma-aminobutyrate antiporter
Location 1483959 - 1485512 (strand: -1)
Length 1554 (nucleotides) / 517 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2079
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13520 Amino acid permease

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0531 Amino acid transport and metabolism (E) E Serine transporter YbeC, amino acid:H+ symporter family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K20265 glutamate:GABA antiporter Quorum sensing -

Protein Sequence

MATSATSSASKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVFFLLLGGLLWFIPVALCAAEMATVEGWQEGGVFAWVSNTLGERWGFAAISFGYLQIAIGFIPMLYFVLGALSYILDWPELNTDPLTKTIAALVILWGLALTQFGGTKYTATIAKLGFFAGILLPAIILVLLAISYLVSGAPLAIEISSKTFFPDFTQIGTLVVFVAFILSYMGVEASATHVNEMKNPGRDYPLAMFLLMIVAICLSSIGGLSVAAVIPHNEINLSAGVVETFSVLVSHFSSGLVWAVKIIAALLLLGVLAEIASWIVGPSRGMFVAAQQGILPPTLAKVNKNGVPVALVITQLIITTIAIVVLTNTGGGGNMSFLIALALTVVIYLCSYFMLFIGYMHLVCKQSDKKRAFNIPGGKGVKLLVAVVGLIVSILAFVVSFFPPSSLPGGSSDTTYVSLLVVSFIIIFALPFIIYACSRKGNKANVSMIHIKSHNAPKGHFFIHPRARSTHYLVPIDKTDHDSQQQK

Flanking regions ( +/- flanking 50bp)

TTGATTATCTGCACACCATTATTTCATTGCATACACGTAGGAGAATGAGCATGGCGACATCTGCAACAAGTTCTGCCTCAAAACAGCTCACATTATTAGGTTTTTTTGCTATAACTGCATCCATGGTGATGGCGGTCTATGAGTATCCAACTTTTGCAACTTCCGGCTTTAGTCTAGTCTTTTTCTTATTACTAGGCGGTTTGTTGTGGTTTATTCCTGTTGCATTATGTGCAGCTGAAATGGCAACCGTTGAAGGATGGCAAGAAGGGGGCGTATTTGCTTGGGTATCTAATACGCTAGGGGAGCGCTGGGGATTTGCGGCGATCTCTTTTGGTTATTTACAAATAGCGATTGGTTTTATTCCAATGCTTTATTTCGTATTAGGAGCATTATCTTATATTCTTGATTGGCCTGAGTTAAATACCGATCCGCTCACCAAAACGATTGCCGCATTAGTGATTTTATGGGGATTAGCTTTAACTCAATTTGGCGGAACTAAATACACGGCTACTATTGCTAAATTAGGTTTCTTCGCGGGGATATTATTACCAGCAATCATTTTAGTGCTTTTAGCTATTAGTTATCTGGTCAGTGGTGCGCCTTTAGCAATAGAAATCAGCAGTAAAACCTTTTTCCCTGATTTTACTCAGATTGGTACTTTAGTGGTTTTTGTGGCCTTTATTTTAAGCTATATGGGCGTTGAAGCCTCAGCCACTCACGTCAACGAAATGAAAAATCCGGGCCGTGATTATCCGCTTGCCATGTTTTTATTAATGATTGTGGCAATATGCTTAAGCTCTATTGGCGGTTTATCTGTTGCGGCAGTGATCCCTCATAACGAAATCAACTTATCTGCGGGGGTGGTTGAAACCTTTAGTGTTTTAGTCAGCCATTTTAGTAGCGGATTAGTTTGGGCGGTTAAAATTATTGCTGCACTATTATTGCTTGGCGTCTTGGCTGAAATTGCGTCGTGGATCGTTGGGCCTTCACGGGGAATGTTTGTGGCTGCACAACAAGGTATTCTTCCGCCAACACTGGCTAAAGTAAATAAAAATGGTGTACCGGTAGCTTTAGTGATCACTCAGCTAATTATTACTACTATTGCTATAGTGGTACTGACTAACACCGGTGGTGGGGGCAATATGTCATTTCTTATTGCTTTAGCGCTGACAGTGGTGATTTATCTATGTAGCTACTTCATGCTGTTTATTGGCTATATGCATTTGGTTTGCAAGCAATCTGATAAGAAACGTGCATTTAATATTCCCGGTGGTAAAGGTGTTAAATTATTAGTGGCCGTTGTCGGTCTGATTGTGTCTATTTTAGCTTTTGTTGTTTCATTCTTCCCGCCTAGCTCTTTACCGGGGGGCAGTAGTGATACAACGTATGTTTCATTGCTAGTGGTGAGTTTTATTATTATTTTTGCTTTACCTTTTATTATTTATGCGTGCTCTCGCAAAGGCAATAAAGCCAATGTATCGATGATCCACATTAAGAGTCATAATGCACCGAAAGGACACTTTTTTATCCATCCTCGTGCTCGTTCAACGCATTATTTAGTGCCAATAGATAAAACAGATCATGATAGTCAGCAACAGAAATAATCTCTTTGGCAGTAGTTCAATGTGATGTTTTTTATAAAAAAGTAGCGATA