Homologs in group_3890

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS14510 PMI_RS14510 36.9 Proteus mirabilis HI4320 - tripartite tricarboxylate transporter permease

Distribution of the homologs in the orthogroup group_3890

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3890

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P70795 2.55e-76 251 30 2 473 4 None Uncharacterized 52.8 kDa protein in TAR-I ttuC' 3'region Agrobacterium vitis
O34299 2.74e-36 137 32 0 233 4 None Uncharacterized protein in TAR-II ttuC' 3'region (Fragment) Agrobacterium vitis

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05935
Feature type CDS
Gene -
Product tripartite tricarboxylate transporter permease
Location 1303138 - 1304625 (strand: 1)
Length 1488 (nucleotides) / 495 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3890
Orthogroup size 2
N. genomes 1

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Genomic region

Domains

PF01970 Tripartite tricarboxylate transporter TctA family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3333 General function prediction only (R) R TctA family transporter

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07793 putative tricarboxylic transport membrane protein Two-component system -

Protein Sequence

MDIFISALAYIDYTTILVVIGACLFGLFVGAIPGLTSTMAIALMVPFTFFLDPIPALALMISVGASSIFAGDIPGALLNIPGTPASAAYTNDAHTLVKEGKTNRVLGMSLTSSVIGGVIGTIILASTAPLLAEFALKFSSYEYMWLTLIGLSCATIVSGAQIRKSLLALFFGIALATIGYDEFTGQARFTFGEVSLMQGVSFIPAMIGLFAISGAIKYYVDRWKEKQIKLAVNTDNSSYNIFKGLGKVVCQRKGGIFRSGIIGTLIGALPGAGADIAAWISYAVSKKLSKKPQKYGQGSEEGIVDASASNNASLAGSWIPSLVFGIPGDSAAAIIIGVLYMKDMQPGPTLFLFNPDKLYAVFIIFFIANLILLPIAFIVVNFLKKIVAIDNAILYPAIILFSIVGSFAITNTMSSIVVMMVMGVIGYFLQQRNFPISPIILGMILGPMLEKNLLSSLMKSDGELINFVNRPISIVLASVFLLIVAMQIRSAFKTK

Flanking regions ( +/- flanking 50bp)

TACTGTTAGTACCGCTACCTCAATTATTTTAATAAATAGAGAAAAACAGTATGGATATATTTATTAGCGCATTAGCTTATATTGATTACACGACAATACTTGTTGTCATAGGCGCTTGCTTATTTGGTTTATTTGTTGGAGCAATTCCGGGGTTAACATCAACCATGGCAATTGCTTTAATGGTGCCTTTTACTTTCTTTCTTGATCCAATTCCTGCATTAGCACTGATGATCTCCGTAGGTGCATCCTCGATATTTGCCGGCGATATTCCAGGGGCATTATTAAATATTCCCGGAACACCCGCCTCTGCAGCTTATACTAACGATGCTCATACATTGGTTAAAGAAGGTAAAACTAATCGTGTATTAGGGATGTCATTAACAAGCTCCGTTATTGGTGGGGTGATCGGCACAATTATTTTAGCGTCAACCGCTCCGTTATTAGCCGAGTTTGCACTTAAATTTAGCTCTTACGAATATATGTGGCTTACTTTAATTGGATTAAGCTGCGCCACTATTGTTTCTGGCGCTCAAATTAGAAAAAGTTTGCTAGCACTGTTTTTCGGTATTGCTTTAGCCACTATTGGCTACGATGAATTTACAGGACAAGCCCGTTTTACCTTTGGTGAAGTCTCTTTAATGCAAGGTGTTAGTTTTATTCCCGCCATGATAGGGCTATTTGCTATCTCTGGTGCGATTAAATATTACGTCGATCGCTGGAAAGAAAAGCAAATTAAATTAGCAGTTAATACAGATAATAGCTCATATAATATTTTTAAAGGGCTGGGAAAGGTTGTTTGCCAACGTAAAGGGGGCATTTTCCGTAGTGGTATTATTGGTACATTGATAGGTGCTTTACCCGGTGCTGGTGCCGATATCGCTGCGTGGATCTCTTATGCGGTATCTAAAAAATTATCAAAAAAACCGCAAAAGTATGGGCAAGGCTCAGAAGAAGGTATTGTTGATGCATCAGCAAGTAATAATGCTAGTTTAGCAGGAAGTTGGATACCTTCATTGGTTTTTGGTATTCCCGGTGATTCCGCGGCAGCTATTATCATTGGTGTATTGTATATGAAAGATATGCAACCTGGACCAACTCTCTTTTTATTTAATCCAGATAAACTGTACGCCGTTTTTATCATTTTCTTTATTGCGAATTTAATCTTATTACCTATAGCTTTTATTGTTGTTAATTTTTTAAAGAAAATTGTTGCTATTGATAATGCAATTCTTTATCCAGCAATTATTTTATTTAGTATTGTCGGTTCATTTGCTATTACCAATACGATGTCATCCATTGTGGTTATGATGGTGATGGGAGTTATCGGCTATTTTCTTCAACAGCGTAACTTTCCTATCTCACCGATTATATTAGGGATGATTTTAGGGCCGATGCTAGAGAAGAATTTACTTTCTTCGTTGATGAAATCGGACGGAGAGCTAATTAATTTTGTTAATAGACCTATTTCAATTGTATTAGCCAGTGTTTTCCTATTAATTGTCGCTATGCAAATTAGGAGCGCATTTAAAACCAAATAACTAATAAGCTATTTATTATTTTCAAAAAATATACACATATTCTATCCAAT