Homologs in group_895

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04675 FBDBKF_04675 83.7 Morganella morganii S1 yadH ABC-type multidrug transport system, permease component
EHELCC_05965 EHELCC_05965 83.7 Morganella morganii S2 yadH ABC-type multidrug transport system, permease component
NLDBIP_06285 NLDBIP_06285 83.7 Morganella morganii S4 yadH ABC-type multidrug transport system, permease component
LHKJJB_03165 LHKJJB_03165 83.7 Morganella morganii S3 yadH ABC-type multidrug transport system, permease component
HKOGLL_06640 HKOGLL_06640 83.7 Morganella morganii S5 yadH ABC-type multidrug transport system, permease component
F4V73_RS09140 F4V73_RS09140 82.1 Morganella psychrotolerans - ABC transporter permease

Distribution of the homologs in the orthogroup group_895

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_895

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AGH2 0.0 547 74 0 371 3 yhhJ Inner membrane transport permease YhhJ Shigella flexneri
P0AGH1 0.0 547 74 0 371 1 yhhJ Inner membrane transport permease YhhJ Escherichia coli (strain K12)
P0AFQ1 5.13e-29 119 24 5 362 3 ybhR Probable multidrug ABC transporter permease YbhR Shigella flexneri
P0AFP9 5.13e-29 119 24 5 362 1 ybhR Probable multidrug ABC transporter permease YbhR Escherichia coli (strain K12)
P0AFQ0 5.13e-29 119 24 5 362 3 ybhR Probable multidrug ABC transporter permease YbhR Escherichia coli O157:H7
P37624 4.04e-17 86 25 13 386 1 rbbA Ribosome-associated ATPase Escherichia coli (strain K12)
P0AFQ2 4.37e-15 79 25 9 352 1 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli (strain K12)
P0AFQ3 4.37e-15 79 25 9 352 3 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFQ4 4.37e-15 79 25 9 352 3 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli O157:H7
Q8T674 0.000127 47 24 4 166 3 abcG20 ABC transporter G family member 20 Dictyostelium discoideum

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05910
Feature type CDS
Gene -
Product ABC transporter permease
Location 1297627 - 1298754 (strand: 1)
Length 1128 (nucleotides) / 375 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_895
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF12698 ABC-2 family transporter protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0842 Defense mechanisms (V) V ABC-type multidrug transport system, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01992 ABC-2 type transport system permease protein - -

Protein Sequence

MWHTVQNIFNLGIKELRSLSRDKAMLALIVFAFTVSIYSSATVTPGSLHHAPIAVADQDKSQLSARIVNSFYMPYFLPPADITPEQIDGLLDRGTYTFALDIPPNFQRDLLAGRKPEIQVNIDATRMSQAFLGNSYIQNIVMGEAKTFLAKERTNDPLPVDLEVRMSFNPNLTQSWFGSVMAIINNITMLSIVLTGAALIREREHGTIEHLLVMPVTPFEIMLSKIWSMGLVVLLASAMSLVLVVKSLLHVPIEGSVLLFMCGVALSLFATTSIGIFLGTMARSMPQFGLLMIMVLLPLNMLSGGMTSRESMPQFVQDVMQTMPTTHFVSLAQAILYRGADFSIVWPQFIVLIIIGSVFFALALLRFRKTISAMA

Flanking regions ( +/- flanking 50bp)

CCATTGTGATTGGGCTGAGTGTCTTTTTCTTGAAAAAGCAGGAGGCTTAAATGTGGCATACCGTACAAAATATTTTTAATTTAGGAATAAAAGAGTTACGAAGTTTATCCCGTGATAAGGCGATGCTGGCATTAATTGTGTTTGCCTTTACCGTATCAATATACTCATCGGCTACTGTAACACCAGGCTCATTACACCATGCGCCGATAGCGGTGGCTGATCAGGATAAATCTCAACTTTCGGCCCGTATTGTCAATAGCTTTTATATGCCTTACTTTTTACCCCCTGCAGATATTACACCCGAGCAGATTGATGGTTTATTAGATAGAGGAACTTATACTTTTGCGTTAGATATTCCGCCTAATTTTCAACGCGATCTACTCGCAGGACGTAAGCCAGAAATTCAAGTCAATATTGATGCAACACGGATGAGCCAAGCTTTCTTAGGAAATAGCTATATTCAAAATATCGTTATGGGAGAAGCGAAAACTTTTCTTGCTAAAGAGCGCACTAACGATCCACTGCCTGTGGATTTAGAAGTTAGAATGAGCTTTAACCCAAACTTAACACAATCTTGGTTTGGCTCAGTTATGGCGATAATCAATAACATTACCATGCTATCTATTGTATTAACCGGGGCGGCACTAATACGAGAGCGAGAGCATGGCACTATTGAACACTTATTAGTTATGCCTGTCACACCATTTGAGATCATGCTGTCTAAAATATGGTCAATGGGATTGGTTGTATTGTTAGCGTCGGCCATGTCTTTAGTGCTAGTGGTTAAATCACTGCTACATGTGCCGATCGAAGGCTCTGTTTTGTTATTTATGTGTGGGGTCGCGTTAAGTTTATTTGCAACGACATCCATTGGTATTTTCTTAGGCACTATGGCGCGCTCAATGCCACAATTTGGTTTATTGATGATTATGGTATTGTTGCCATTAAATATGTTGTCTGGAGGGATGACCTCAAGAGAGAGTATGCCTCAGTTTGTACAAGATGTGATGCAAACTATGCCAACCACACATTTTGTCAGCCTTGCACAAGCGATATTGTATAGAGGCGCAGATTTCTCGATTGTTTGGCCTCAATTTATCGTTTTAATTATTATTGGCTCAGTCTTTTTTGCATTGGCACTGTTACGTTTTAGAAAAACGATATCTGCAATGGCTTAGTCGTTCTGATAAACCGAAAAAAGAGACTTAAGGCATAAAACGATAACCGA